Non-Coding RNA Search

Ss1.1-Mixn-0024k05.5

Sequence:


               
               CCGGAATCATATGACATAGCAATGAGGTTTTTGTCATTTATTGGAGGAACACTGAATGAG
ATTGGAAAGCCTGAAATGCAACAAAAAATAAATTCATTCCTTGAAAAAGAAGGAATAGAG
AAAATTGCAGAAAGATTGCAAACAACAGTACACACCTTACAGGTCATTATAGATGGTCTC
AGCCAGCCTGAGACCTTTGACTTTCGAACAGATTTCGACAAACCTGATTTCAAGAGAAGC
ATAGTCTGCTTGGAAGACTTGCAGGTTGGGACCGTTCTCACAGGCAAAGTCGAGAATGCC
ACCCTGTTTGGAATATTCGTGGATATAGGAGTAGGGAGATCAGGGCTGATTCCCATACGA
AATGTAACAGAAGCAAAACTTTCAAAGACAAAGAAGAGAAGGAGTCTTGGGCTGGGCCCT
GGAGAAAGAGTGGAAGTCCAAGTACTTAACATTGACATTCCCCGATCTAGGATTACCCTG
GACCTTATCCGGGTGTTGTGAGTGGGCCCCTGACAGCAAAACGCTGGTTTTATTCCCTCA
TTTCTGCAGGTTGGCAAGAATAAGTGAGATGTTTGTGAACTCTAGATAGCAGATGGAGAG
GAATTCACTTAGTATCAGAAGTATTTTCCAAACACTTTCCCTATTCTTCCTTCTGAATAA
ATAGAGAGCTAACGGTTTGATTTTTCCCCTTAGAAAGAGCAACTAATAGACATCTTTATG
TGGCTTTATGTAGTAATAATGATTTTCTGACCAAAATTTTATTTTTTATAACTCATCTTT
GACTCCTTTTGCATTTTGTATAATAGATTGTTTCATTTCTACTTGCCAACATGCCTTGCT
GGACTTATGGAATTACCTTCTTGATTTAAATTATACAGTGTTTCTTGACACAGTAGGGCT
GGCAGTATTTAATCCTCTCTTTTTATAGATTTTTTTTTTTAATCAGGCATTTTGAACTTG
AATCATGGCTTTCCCTTGCCAAGCAAACCAAAAATATACCAATAAAACAGATCCTGATGT
GTTCATAACCATCAAGTGAATGGCTCAAAACGTTTCTCAGAAGGATATATGTATTGATCC
CTACAATAAAATTTTGTGGCTAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGAATCATATGACATAGCAATGAGGTTTTTGTCATTTATTGGAGGAACACTGAATGAG
ATTGGAAAGCCTGAAATGCAACAAAAAATAAATTCATTCCTTGAAAAAGAAGGAATAGAG
AAAATTGCAGAAAGATTGCAAACAACAGTACACACCTTACAGGTCATTATAGATGGTCTC
AGCCAGCCTGAGACCTTTGACTTTCGAACAGATTTCGACAAACCTGATTTCAAGAGAAGC
ATAGTCTGCTTGGAAGACTTGCAGGTTGGGACCGTTCTCACAGGCAAAGTCGAGAATGCC
ACCCTGTTTGGAATATTCGTGGATATAGGAGTAGGGAGATCAGGGCTGATTCCCATACGA
AATGTAACAGAAGCAAAACTTTCAAAGACAAAGAAGAGAAGGAGTCTTGGGCTGGGCCCT
GGAGAAAGAGTGGAAGTCCAAGTACTTAACATTGACATTCCCCGATCTAGGATTACCCTG
GACCTTATCCGGGTGTTGTGAGTGGGCCCCTGACAGCAAAACGCTGGTTTTATTCCCTCA
TTTCTGCAGGTTGGCAAGAATAAGTGAGATGTTTGTGAACTCTAGATAGCAGATGGAGAG
GAATTCACTTAGTATCAGAAGTATTTTCCAAACACTTTCCCTATTCTTCCTTCTGAATAA
ATAGAGAGCTAACGGTTTGATTTTTCCCCTTAGAAAGAGCAACTAATAGACATCTTTATG
TGGCTTTATGTAGTAATAATGATTTTCTGACCAAAATTTTATTTTTTATAACTCATCTTT
GACTCCTTTTGCATTTTGTATAATAGATTGTTTCATTTCTACTTGCCAACATGCCTTGCT
GGACTTATGGAATTACCTTCTTGATTTAAATTATACAGTGTTTCTTGACACAGTAGGGCT
GGCAGTATTTAATCCTCTCTTTTTATAGATTTTTTTTTTTAATCAGGCATTTTGAACTTG
AATCATGGCTTTCCCTTGCCAAGCAAACCAAAAATATACCAATAAAACAGATCCTGATGT
GTTCATAACCATCAAGTGAATGGCTCAAAACGTTTCTCAGAAGGATATATGTATTGATCC
CTACAATAAAATTTTGTGGCTAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61846380|ref|XP_598571.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61846380|ref|XP_598571.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               210-449, + strand, RNAz p=0.819569

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               210-449, + strand, RNAz p=0.819569

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018079, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018079, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               210-1106, gnl|bosTau2|chr11 (24119811-24118923)
               

               
               210-1106, gnl|Hg17|chr2 (45528391-45527470)
               

               
               210-1106, gnl|Mm7|chr17 (84282362-84281542)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               210-1106, gnl|bosTau2|chr11 (24119811-24118923)
               

               
               210-1106, gnl|Hg17|chr2 (45528391-45527470)
               

               
               210-1106, gnl|Mm7|chr17 (84282362-84281542)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fco (0.314416)
               

               
               thg (0.253582)
               

               
               pan (0.23596)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               thg (0.253582)
               

               
               pan (0.23596)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	210-1106, gnl\|bosTau2\|chr11 (24119811-24118923)
	210-1106, gnl\|Hg17\|chr2 (45528391-45527470)
	210-1106, gnl\|Mm7\|chr17 (84282362-84281542)

	fco (0.314416)
	thg (0.253582)
	pan (0.23596)
	cut (0.169924)
	fhi (0.169578)
	fat (0.147427)
	liv (0.146284)
	pla (0.133672)
	ova (0.129132)
	ebs (0.118301)
	nbm (0.0993246)