Non-Coding RNA Search

Ss1.1-Mixn-0024l09.5

Sequence:


               
               CCCAGAGCCAGGACAAACTGCAAAGCTCCTCAACTGTCCTAATACTGTCCAGTGAAAACC
AATGACCCTGAGACACTGCCAGATTCTCAAGTGCCTTTGGGATACTCAGAGACTTCAAAG
GCTAAGTTACACAAGGTCTTGATCTGGACTTCAGAATATATCAAATCCATTGACAAATTA
ATGGTGGTGTACTGTGTGTGGCTACTCTGTTAAATGAAAGATCCCGTGTCCCAGTTGCTC
AGGACATGAGAGAGCTTACATATGGTTGTACGAAGGGAGAGGGGATAATTGCTGGCAGAC
ACATAGTTAAGGGTTGCCCAGGAATAATTCTTTCTGGATTAACTATCCCAGGGAAGTGGC
AAAGGGTCATTTCTGCACCAAGAGGTGAATGTGACTCAAATGTTAGAACACTGTAATCAG
AACAGACAACTCGTTACTACAAATTAAACCATTCTGTTTTCTTCGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGAGCCAGGACAAACTGCAAAGCTCCTCAACTGTCCTAATACTGTCCAGTGAAAACC
AATGACCCTGAGACACTGCCAGATTCTCAAGTGCCTTTGGGATACTCAGAGACTTCAAAG
GCTAAGTTACACAAGGTCTTGATCTGGACTTCAGAATATATCAAATCCATTGACAAATTA
ATGGTGGTGTACTGTGTGTGGCTACTCTGTTAAATGAAAGATCCCGTGTCCCAGTTGCTC
AGGACATGAGAGAGCTTACATATGGTTGTACGAAGGGAGAGGGGATAATTGCTGGCAGAC
ACATAGTTAAGGGTTGCCCAGGAATAATTCTTTCTGGATTAACTATCCCAGGGAAGTGGC
AAAGGGTCATTTCTGCACCAAGAGGTGAATGTGACTCAAATGTTAGAACACTGTAATCAG
AACAGACAACTCGTTACTACAAATTAAACCATTCTGTTTTCTTCGCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               323-435, - strand, RNAz p=0.962644

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               323-435, - strand, RNAz p=0.962644

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-466, gnl|bosTau2|chr22 (12058259-12057793)
               

               
               1-466, gnl|canFam2|chr20 (11319103-11318596)
               

               
               1-466, gnl|dasNov1|scaffold_70752 (6510-6004)
               

               
               1-466, gnl|echTel1|scaffold_325473 (130637-131068)
               

               
               1-466, gnl|hg17|chr3 (9979345-9979870)
               

               
               1-466, gnl|Hg17|chr3 (9979834-9979360)
               

               
               1-466, gnl|loxAfr1|scaffold_86004 (3105-2632)
               

               
               1-466, gnl|mm7|chr6 (113675795-113676284)
               

               
               1-466, gnl|Mm7|chr6 (113676248-113675810)
               

               
               1-466, gnl|monDom2|scaffold_5 (36747989-36748501)
               

               
               1-466, gnl|oryCun1|scaffold_211181 (50055-49626)
               

               
               1-466, gnl|panTro1|chr2 (10355055-10355579)
               

               
               1-466, gnl|rheMac2|chr2 (51005394-51004874)
               

               
               1-466, gnl|rn3|chr4 (149650564-149651053)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-466, gnl|bosTau2|chr22 (12058259-12057793)
               

               
               1-466, gnl|canFam2|chr20 (11319103-11318596)
               

               
               1-466, gnl|dasNov1|scaffold_70752 (6510-6004)
               

               
               1-466, gnl|echTel1|scaffold_325473 (130637-131068)
               

               
               1-466, gnl|hg17|chr3 (9979345-9979870)
               

               
               1-466, gnl|Hg17|chr3 (9979834-9979360)
               

               
               1-466, gnl|loxAfr1|scaffold_86004 (3105-2632)
               

               
               1-466, gnl|mm7|chr6 (113675795-113676284)
               

               
               1-466, gnl|Mm7|chr6 (113676248-113675810)
               

               
               1-466, gnl|monDom2|scaffold_5 (36747989-36748501)
               

               
               1-466, gnl|oryCun1|scaffold_211181 (50055-49626)
               

               
               1-466, gnl|panTro1|chr2 (10355055-10355579)
               

               
               1-466, gnl|rheMac2|chr2 (51005394-51004874)
               

               
               1-466, gnl|rn3|chr4 (149650564-149651053)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cmu (0.186393)
               

               
               eye (0.170503)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               eye (0.170503)

	1-466, gnl\|bosTau2\|chr22 (12058259-12057793)
	1-466, gnl\|canFam2\|chr20 (11319103-11318596)
	1-466, gnl\|dasNov1\|scaffold_70752 (6510-6004)
	1-466, gnl\|echTel1\|scaffold_325473 (130637-131068)
	1-466, gnl\|hg17\|chr3 (9979345-9979870)
	1-466, gnl\|Hg17\|chr3 (9979834-9979360)
	1-466, gnl\|loxAfr1\|scaffold_86004 (3105-2632)
	1-466, gnl\|mm7\|chr6 (113675795-113676284)
	1-466, gnl\|Mm7\|chr6 (113676248-113675810)
	1-466, gnl\|monDom2\|scaffold_5 (36747989-36748501)
	1-466, gnl\|oryCun1\|scaffold_211181 (50055-49626)
	1-466, gnl\|panTro1\|chr2 (10355055-10355579)
	1-466, gnl\|rheMac2\|chr2 (51005394-51004874)
	1-466, gnl\|rn3\|chr4 (149650564-149651053)