Ss1.1-Mixn-0024m21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGTCAGACGACTTCCTACCGCCGCCGGAGTGCCCAGTGTTCGAGCCTAGCTGGGCGG AGTTCCGAGACCCTCTCGGCTACATCGCGAAAATCAGGCCCATCGCCGAGAAGTCGGGCA TTTGCAAGATCCGCCCACCCGCGGACTGGCAGCCACCGTTTGCTGTAGAAGTGGACAACT TCAGGTTTACTCCCCGAATCCAGAGACTGAATGAACTAGAGATCGTGGTGGAAGAAGGTG GCTATGAAGCCATCTGCAAGGACCGTCGGTGGGCCCGGGTGGCCCAGCGCCTCAACTACC CACCAGGCAAGAACATTGGCTCTTTGCTACGCTCTCACTATGAACGCATTGTTTACCCCT ATGAGATGTACCAGTCTGGAGCCAACCTGGTGCAGTGCAACACACGTCCATTTGATAATG AAGAGAAGGACAAGGAATATAAACCCCACAGTATCCCCCTTCGACAGTCTGTACAACCCT CCAAGTTCAACAGTTATGGCCGGCGAGCCAAGAGACTGCAGCCTGATCCGGAACCCACAG AGGAAGACATTGAAAAGAACCCTGAACTGAAGAAGCTTCAGATCTATGGGGCAGGCCCCA AGATGATGGGCCTGGGCCTCATGGCCAAGGATAAGACTCTGCGGAAGAAAGATAAGGAAG GGCCTGAGTGCCCCCCACCAGTAGTGGTGAAGGAGGAGTCAGGCGGGGATGTGAAGGTGG AGTCAACTTCACCCAAGACCTTCCTGGAGAGCAAGGAGGAGCTGAGTCACAGCCCAGAGC CCTGCACCAAGATGACCATGAGGCTGCGGAGGAACCACAGCAATGCCCAGTTTATTGAGT CATATGTATGCCGGATGTGTTCCCGAGGGGATGAGGACGACAAGCTCCTGCTGTGTGATG GCTGTGATGACAACTACCACATCTTCTGCTTGCTGCCTCCTTTGCCTGAGATTCCCAAGG GTGTTTGGCGGTGCCCAAAGTGTGTCATGGCGGAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGTCAGACGACTTCCTACCGCCGCCGGAGTGCCCAGTGTTCGAGCCTAGCTGGGCGG AGTTCCGAGACCCTCTCGGCTACATCGCGAAAATCAGGCCCATCGCCGAGAAGTCGGGCA TTTGCAAGATCCGCCCACCCGCGGACTGGCAGCCACCGTTTGCTGTAGAAGTGGACAACT TCAGGTTTACTCCCCGAATCCAGAGACTGAATGAACTAGAGATCGTGGTGGAAGAAGGTG GCTATGAAGCCATCTGCAAGGACCGTCGGTGGGCCCGGGTGGCCCAGCGCCTCAACTACC CACCAGGCAAGAACATTGGCTCTTTGCTACGCTCTCACTATGAACGCATTGTTTACCCCT ATGAGATGTACCAGTCTGGAGCCAACCTGGTGCAGTGCAACACACGTCCATTTGATAATG AAGAGAAGGACAAGGAATATAAACCCCACAGTATCCCCCTTCGACAGTCTGTACAACCCT CCAAGTTCAACAGTTATGGCCGGCGAGCCAAGAGACTGCAGCCTGATCCGGAACCCACAG AGGAAGACATTGAAAAGAACCCTGAACTGAAGAAGCTTCAGATCTATGGGGCAGGCCCCA AGATGATGGGCCTGGGCCTCATGGCCAAGGATAAGACTCTGCGGAAGAAAGATAAGGAAG GGCCTGAGTGCCCCCCACCAGTAGTGGTGAAGGAGGAGTCAGGCGGGGATGTGAAGGTGG AGTCAACTTCACCCAAGACCTTCCTGGAGAGCAAGGAGGAGCTGAGTCACAGCCCAGAGC CCTGCACCAAGATGACCATGAGGCTGCGGAGGAACCACAGCAATGCCCAGTTTATTGAGT CATATGTATGCCGGATGTGTTCCCGAGGGGATGAGGACGACAAGCTCCTGCTGTGTGATG GCTGTGATGACAACTACCACATCTTCTGCTTGCTGCCTCCTTTGCCTGAGATTCCCAAGG GTGTTTGGCGGTGCCCAAAGTGTGTCATGGCGGAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 650-833, - strand, RNAz p=0.959263 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 650-833, - strand, RNAz p=0.959263 |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 1-144, gnl|bosTau2|chr25 (13919600-13919743) | |
| 1-144, gnl|canFam2|chrX (44945233-44945403) | |
| 1-144, gnl|canFam2|chrX (44945233-44945372) | |
| 1-144, gnl|danRer3|chr8 (18647772-18647621) | |
| 1-144, gnl|danRer3|chr8 (18647771-18647632) | |
| 1-144, gnl|dasNov1|scaffold_8859 (8109-7935) | |
| 1-144, gnl|dasNov1|scaffold_8859 (8109-7970) | |
| 1-144, gnl|echTel1|scaffold_302793 (5752-5925) | |
| 1-144, gnl|echTel1|scaffold_302793 (5752-5891) | |
| 1-144, gnl|fr1|chrUn (239866893-239866721) | |
| 1-144, gnl|fr1|chrUn (239866892-239866753) | |
| 1-144, gnl|galGal2|chr1 (56937154-56937308) | |
| 1-144, gnl|hg17|chrX (53136939-53137078) | |
| 1-144, gnl|Hg17|chrX (53137085-53136942) | |
| 1-144, gnl|hg17|chrY (20294386-20294566) | |
| 1-144, gnl|mm7|chrX (146992391-146992252) | |
| 1-144, gnl|Mm7|chrX (146992243-146992386) | |
| 1-144, gnl|mm7|chrY (234570-234386) | |
| 1-144, gnl|monDom2|scaffold_134 (25281-25120) | |
| 1-144, gnl|monDom2|scaffold_134 (25281-25142) | |
| 1-144, gnl|oryCun1|scaffold_209949 (3665-3843) | |
| 1-144, gnl|oryCun1|scaffold_209949 (3669-3808) | |
| 1-144, gnl|panTro1|chrY (21104746-21104926) | |
| 1-144, gnl|panTro1|chrY (21104752-21104891) | |
| 1-144, gnl|rheMac2|chrX (51545546-51545722) | |
| 1-144, gnl|rheMac2|chrX (51545548-51545687) | |
| 1-144, gnl|rn3|chrX (41796766-41796586) | |
| 1-144, gnl|rn3|chrX (41796760-41796621) | |
| 1-144, gnl|tetNig1|chr9 (8991362-8991519) | |
| 1-144, gnl|tetNig1|chr9 (8991363-8991503) | |
| 1-144, gnl|xenTro1|scaffold_723 (303478-303321) | |
| 1-144, gnl|xenTro1|scaffold_723 (303474-303335) | |
| 217-392, gnl|bosTau2|chr25 (13926321-13926496) | |
| 217-392, gnl|canFam2|chrX (44938292-44938490) | |
| 217-392, gnl|canFam2|chrX (44938282-44938497) | |
| 217-392, gnl|danRer3|chrNA (186853507-186853691) | |
| 217-392, gnl|danRer3|chrNA (186853494-186853699) | |
| 217-392, gnl|dasNov1|scaffold_1410 (2344-2146) | |
| 217-392, gnl|dasNov1|scaffold_53401 (4358-4566) | |
| 217-392, gnl|echTel1|scaffold_27586 (1303-1478) | |
| 217-392, gnl|echTel1|scaffold_281729 (75474-75713) | |
| 217-392, gnl|fr1|chrUn (239867934-239867756) | |
| 217-392, gnl|fr1|chrUn (239867943-239867743) | |
| 217-392, gnl|galGal2|chr1 (56931730-56931929) | |
| 217-392, gnl|hg17|chrX (53129988-53130203) | |
| 217-392, gnl|Hg17|chrX (53130174-53129999) | |
| 217-392, gnl|hg17|chrY (20291328-20291522) | |
| 217-392, gnl|loxAfr1|scaffold_34084 (15318-15120) | |
| 217-392, gnl|loxAfr1|scaffold_34084 (15328-15113) | |
| 217-392, gnl|mm7|chrX (146998884-146998670) | |
| 217-392, gnl|Mm7|chrX (146998696-146998871) | |
| 217-392, gnl|mm7|chrY (236403-236205) | |
| 217-392, gnl|monDom2|scaffold_31 (24147661-24147862) | |
| 217-392, gnl|monDom2|scaffold_31 (24147658-24147870) | |
| 217-392, gnl|oryCun1|scaffold_180828 (5937-6135) | |
| 217-392, gnl|oryCun1|scaffold_180828 (5927-6142) | |
| 217-392, gnl|panTro1|chrY (21101702-21101896) | |
| 217-392, gnl|panTro1|chrY (21101698-21101880) | |
| 217-392, gnl|rheMac2|chrX (51538689-51538887) | |
| 217-392, gnl|rheMac2|chrX (51538679-51538894) | |
| 217-392, gnl|rn3|chrX (41802893-41802695) | |
| 217-392, gnl|rn3|chrX (41802903-41802689) | |
| 217-392, gnl|tetNig1|chr9 (8990348-8990517) | |
| 217-392, gnl|tetNig1|chr9 (8990340-8990519) | |
| 217-392, gnl|xenTro1|scaffold_723 (308850-308653) | |
| 217-392, gnl|xenTro1|scaffold_723 (308853-308646) | |
| 650-833, gnl|bosTau2|chr25 (13927953-13928136) | |
| 650-833, gnl|Hg17|chrX (53128181-53127998) | |
| 650-833, gnl|Mm7|chrX (147003775-147003958) | |
| 834-993, gnl|bosTau2|chr25 (13929174-13929333) | |
| 834-993, gnl|Hg17|chrX (53127050-53126891) | |
| 834-993, gnl|Mm7|chrX (147004930-147005089) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-144, gnl|bosTau2|chr25 (13919600-13919743) | |
| 1-144, gnl|canFam2|chrX (44945233-44945403) | |
| 1-144, gnl|canFam2|chrX (44945233-44945372) | |
| 1-144, gnl|danRer3|chr8 (18647772-18647621) | |
| 1-144, gnl|danRer3|chr8 (18647771-18647632) | |
| 1-144, gnl|dasNov1|scaffold_8859 (8109-7935) | |
| 1-144, gnl|dasNov1|scaffold_8859 (8109-7970) | |
| 1-144, gnl|echTel1|scaffold_302793 (5752-5925) | |
| 1-144, gnl|echTel1|scaffold_302793 (5752-5891) | |
| 1-144, gnl|fr1|chrUn (239866893-239866721) | |
| 1-144, gnl|fr1|chrUn (239866892-239866753) | |
| 1-144, gnl|galGal2|chr1 (56937154-56937308) | |
| 1-144, gnl|hg17|chrX (53136939-53137078) | |
| 1-144, gnl|Hg17|chrX (53137085-53136942) | |
| 1-144, gnl|hg17|chrY (20294386-20294566) | |
| 1-144, gnl|mm7|chrX (146992391-146992252) | |
| 1-144, gnl|Mm7|chrX (146992243-146992386) | |
| 1-144, gnl|mm7|chrY (234570-234386) | |
| 1-144, gnl|monDom2|scaffold_134 (25281-25120) | |
| 1-144, gnl|monDom2|scaffold_134 (25281-25142) | |
| 1-144, gnl|oryCun1|scaffold_209949 (3665-3843) | |
| 1-144, gnl|oryCun1|scaffold_209949 (3669-3808) | |
| 1-144, gnl|panTro1|chrY (21104746-21104926) | |
| 1-144, gnl|panTro1|chrY (21104752-21104891) | |
| 1-144, gnl|rheMac2|chrX (51545546-51545722) | |
| 1-144, gnl|rheMac2|chrX (51545548-51545687) | |
| 1-144, gnl|rn3|chrX (41796766-41796586) | |
| 1-144, gnl|rn3|chrX (41796760-41796621) | |
| 1-144, gnl|tetNig1|chr9 (8991362-8991519) | |
| 1-144, gnl|tetNig1|chr9 (8991363-8991503) | |
| 1-144, gnl|xenTro1|scaffold_723 (303478-303321) | |
| 1-144, gnl|xenTro1|scaffold_723 (303474-303335) | |
| 217-392, gnl|bosTau2|chr25 (13926321-13926496) | |
| 217-392, gnl|canFam2|chrX (44938292-44938490) | |
| 217-392, gnl|canFam2|chrX (44938282-44938497) | |
| 217-392, gnl|danRer3|chrNA (186853507-186853691) | |
| 217-392, gnl|danRer3|chrNA (186853494-186853699) | |
| 217-392, gnl|dasNov1|scaffold_1410 (2344-2146) | |
| 217-392, gnl|dasNov1|scaffold_53401 (4358-4566) | |
| 217-392, gnl|echTel1|scaffold_27586 (1303-1478) | |
| 217-392, gnl|echTel1|scaffold_281729 (75474-75713) | |
| 217-392, gnl|fr1|chrUn (239867934-239867756) | |
| 217-392, gnl|fr1|chrUn (239867943-239867743) | |
| 217-392, gnl|galGal2|chr1 (56931730-56931929) | |
| 217-392, gnl|hg17|chrX (53129988-53130203) | |
| 217-392, gnl|Hg17|chrX (53130174-53129999) | |
| 217-392, gnl|hg17|chrY (20291328-20291522) | |
| 217-392, gnl|loxAfr1|scaffold_34084 (15318-15120) | |
| 217-392, gnl|loxAfr1|scaffold_34084 (15328-15113) | |
| 217-392, gnl|mm7|chrX (146998884-146998670) | |
| 217-392, gnl|Mm7|chrX (146998696-146998871) | |
| 217-392, gnl|mm7|chrY (236403-236205) | |
| 217-392, gnl|monDom2|scaffold_31 (24147661-24147862) | |
| 217-392, gnl|monDom2|scaffold_31 (24147658-24147870) | |
| 217-392, gnl|oryCun1|scaffold_180828 (5937-6135) | |
| 217-392, gnl|oryCun1|scaffold_180828 (5927-6142) | |
| 217-392, gnl|panTro1|chrY (21101702-21101896) | |
| 217-392, gnl|panTro1|chrY (21101698-21101880) | |
| 217-392, gnl|rheMac2|chrX (51538689-51538887) | |
| 217-392, gnl|rheMac2|chrX (51538679-51538894) | |
| 217-392, gnl|rn3|chrX (41802893-41802695) | |
| 217-392, gnl|rn3|chrX (41802903-41802689) | |
| 217-392, gnl|tetNig1|chr9 (8990348-8990517) | |
| 217-392, gnl|tetNig1|chr9 (8990340-8990519) | |
| 217-392, gnl|xenTro1|scaffold_723 (308850-308653) | |
| 217-392, gnl|xenTro1|scaffold_723 (308853-308646) | |
| 650-833, gnl|bosTau2|chr25 (13927953-13928136) | |
| 650-833, gnl|Hg17|chrX (53128181-53127998) | |
| 650-833, gnl|Mm7|chrX (147003775-147003958) | |
| 834-993, gnl|bosTau2|chr25 (13929174-13929333) | |
| 834-993, gnl|Hg17|chrX (53127050-53126891) | |
| 834-993, gnl|Mm7|chrX (147004930-147005089) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |