Non-Coding RNA Search

Ss1.1-Mixn-0024o15.5

Sequence:


               
               CAGTATCTCCACCAGATCCAGGCCAACCACGAGACGCTGCTGCGGGAGGTGCAGACCTTG
CGCGACCGGCTGTGCACAGAGGACGAAGCAGGCTCCTGCGCCACCGCCCAGAGGCTCCTG
CAGGTGTACAAGCAGCTGCGCAGCCCCAGCCTCCTGTTGCTGTGACTCCAGCTGCCCGGC
CTCCATGCTCAGCCTCTGCGCCCAGAACAGTGGGGCTGGACCAGCAGCATCCCGCCCACT
TGGAAGCCAGGCCCAGGCTGTGGGCTCCAGACCCCAGCGCAGGAGCGCCGTTGCCCTAGC
GGCCTGCAGAGGCCATGGAGACGGGGCTTCTGGGTGGAGACTCGAGCGGGTGGGCTTTGG
TGGGCCACGTTCCGAGCCCAACGCTTCCCCTCTCGGCCGCACCGCCTGCTCACCCCCAGA
CCTCTCATCCAGCACTGTCCACAGCTGCCTGGCTGCCCACCCTGGGTGCCTCAGCCCTGC
TTCTCTGCAGCCGCTGGGGTCACCAGGTGAGAGGGCGCCCCTGTGACCAAAGCACAAAGA
GGAGCGGGGACTCCTACAGGTGCCTTGTGGCCAAGATACTCAACAACTAGGCGCCTCTGG
CCAAGGCCAGCACTGTGCATCATTCCCAAGGGTCGCTCGGGGCAGGCAGCAGCCCTGGCG
CGGCTCCGGTGCTTTGGGGAGGGTGGCTCTCCCCGACTTCCCATGGTGCCCTCCTGCTGT
GCTGCAGCCCGGCGAGACCTCTCGCCTCAAAGAACGCCCCTTTCTGTTGCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTATCTCCACCAGATCCAGGCCAACCACGAGACGCTGCTGCGGGAGGTGCAGACCTTG
CGCGACCGGCTGTGCACAGAGGACGAAGCAGGCTCCTGCGCCACCGCCCAGAGGCTCCTG
CAGGTGTACAAGCAGCTGCGCAGCCCCAGCCTCCTGTTGCTGTGACTCCAGCTGCCCGGC
CTCCATGCTCAGCCTCTGCGCCCAGAACAGTGGGGCTGGACCAGCAGCATCCCGCCCACT
TGGAAGCCAGGCCCAGGCTGTGGGCTCCAGACCCCAGCGCAGGAGCGCCGTTGCCCTAGC
GGCCTGCAGAGGCCATGGAGACGGGGCTTCTGGGTGGAGACTCGAGCGGGTGGGCTTTGG
TGGGCCACGTTCCGAGCCCAACGCTTCCCCTCTCGGCCGCACCGCCTGCTCACCCCCAGA
CCTCTCATCCAGCACTGTCCACAGCTGCCTGGCTGCCCACCCTGGGTGCCTCAGCCCTGC
TTCTCTGCAGCCGCTGGGGTCACCAGGTGAGAGGGCGCCCCTGTGACCAAAGCACAAAGA
GGAGCGGGGACTCCTACAGGTGCCTTGTGGCCAAGATACTCAACAACTAGGCGCCTCTGG
CCAAGGCCAGCACTGTGCATCATTCCCAAGGGTCGCTCGGGGCAGGCAGCAGCCCTGGCG
CGGCTCCGGTGCTTTGGGGAGGGTGGCTCTCCCCGACTTCCCATGGTGCCCTCCTGCTGT
GCTGCAGCCCGGCGAGACCTCTCGCCTCAAAGAACGCCCCTTTCTGTTGCAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               404-512, - strand, RNAz p=0.869375
               

               
               609-749, + strand, RNAz p=0.991186

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               404-512, - strand, RNAz p=0.869375
               

               
               609-749, + strand, RNAz p=0.991186

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               659-733, + strand, RNAmicro p=0.965308

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               659-733, + strand, RNAmicro p=0.965308

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of BC021968, -
               

               
               5' of BC021968, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC021968, -
               

               
               5' of BC021968, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               32-174, gnl|bosTau2|chr19 (45181930-45181788)
               

               
               32-174, gnl|Hg17|chr17 (77118453-77118313)
               

               
               32-174, gnl|Mm7|chr11 (120479466-120479326)
               


               
               201-540, gnl|bosTau2|chr19 (45181392-45181051)
               

               
               201-540, gnl|canFam2|chr9 (3605174-3604582)
               

               
               201-540, gnl|hg17|chr17 (77117428-77118173)
               

               
               201-540, gnl|mm7|chr11 (120478670-120479187)
               

               
               201-540, gnl|panTro1|chr19 (80851760-80852503)
               

               
               201-540, gnl|rheMac2|chr16 (76998032-76998772)
               

               
               201-540, gnl|rn3|chr10 (109811827-109812360)
               


               
               552-769, gnl|bosTau2|chr19 (45181018-45180782)
               

               
               552-769, gnl|Hg17|chr17 (77117709-77117398)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-174, gnl|bosTau2|chr19 (45181930-45181788)
               

               
               32-174, gnl|Hg17|chr17 (77118453-77118313)
               

               
               32-174, gnl|Mm7|chr11 (120479466-120479326)
               


               
               201-540, gnl|bosTau2|chr19 (45181392-45181051)
               

               
               201-540, gnl|canFam2|chr9 (3605174-3604582)
               

               
               201-540, gnl|hg17|chr17 (77117428-77118173)
               

               
               201-540, gnl|mm7|chr11 (120478670-120479187)
               

               
               201-540, gnl|panTro1|chr19 (80851760-80852503)
               

               
               201-540, gnl|rheMac2|chr16 (76998032-76998772)
               

               
               201-540, gnl|rn3|chr10 (109811827-109812360)
               


               
               552-769, gnl|bosTau2|chr19 (45181018-45180782)
               

               
               552-769, gnl|Hg17|chr17 (77117709-77117398)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	404-512, - strand, RNAz p=0.869375
	609-749, + strand, RNAz p=0.991186

	32-174, gnl\|bosTau2\|chr19 (45181930-45181788)
	32-174, gnl\|Hg17\|chr17 (77118453-77118313)
	32-174, gnl\|Mm7\|chr11 (120479466-120479326)

	201-540, gnl\|bosTau2\|chr19 (45181392-45181051)
	201-540, gnl\|canFam2\|chr9 (3605174-3604582)
	201-540, gnl\|hg17\|chr17 (77117428-77118173)
	201-540, gnl\|mm7\|chr11 (120478670-120479187)
	201-540, gnl\|panTro1\|chr19 (80851760-80852503)
	201-540, gnl\|rheMac2\|chr16 (76998032-76998772)
	201-540, gnl\|rn3\|chr10 (109811827-109812360)

	552-769, gnl\|bosTau2\|chr19 (45181018-45180782)
	552-769, gnl\|Hg17\|chr17 (77117709-77117398)