Non-Coding RNA Search

Ss1.1-Mixn-0024o16.5

Sequence:


               
               TCATGGGGAGGCCAGGTACCCGGAAGTGGGGTGGGAGGGAGTAGTGAATCACAAAAAGTT
GAAGGACATCCGGAAGTCACCGCATCTGATGCTAACAAGAAAGTAGCAGAGAATGAGTGA
CGTGATCGAAGCTGCTCCTGCACACAGAACAAAGCTCTGCTCATAAAAGCTGTCCTCCCT
GGGAGAAGGAGCTCCCTGGGGAACTTAGGTATCACTTAGGTAACAGTGAGGAGGGTACAG
GGGTGTTAGCACTTGACCTCCAAGAAGTGAAATGTGAAATGGTCGTTTCCATAGATTCAC
TCAGTTCACCTCACCCAATCCCTCTGAGGTAGGTAAGGGGCAGGTGACGTCAGCCCCACT
TTACTAATGGGGTAAAGTGAGGCCCTAGGACTTGCTGCGGGTCACCCCATGGCACATGCC
AACGGCCTTAGTGAGATGGCAGTCTTGTGCCTTTGAGGTCTTTCCCTGCACTGGCAATAC
CAGTCCTCTCTATAAAGCCCCTTCACCTAGAGGGGTCAGCAAGTGTCAGGTGGACCATCT
GGCTTACAGTTGTAAACTTTTGATGTAGTAGAAGGAAAGTAAGCCCAGTCAATGGAAATC
ACCAAAGTCAGGGGATCTGGGGAGGGGGCTACCCCACCCCAATGAGGGAGTGGGTCTGCA
ATTTAAAACGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATGGGGAGGCCAGGTACCCGGAAGTGGGGTGGGAGGGAGTAGTGAATCACAAAAAGTT
GAAGGACATCCGGAAGTCACCGCATCTGATGCTAACAAGAAAGTAGCAGAGAATGAGTGA
CGTGATCGAAGCTGCTCCTGCACACAGAACAAAGCTCTGCTCATAAAAGCTGTCCTCCCT
GGGAGAAGGAGCTCCCTGGGGAACTTAGGTATCACTTAGGTAACAGTGAGGAGGGTACAG
GGGTGTTAGCACTTGACCTCCAAGAAGTGAAATGTGAAATGGTCGTTTCCATAGATTCAC
TCAGTTCACCTCACCCAATCCCTCTGAGGTAGGTAAGGGGCAGGTGACGTCAGCCCCACT
TTACTAATGGGGTAAAGTGAGGCCCTAGGACTTGCTGCGGGTCACCCCATGGCACATGCC
AACGGCCTTAGTGAGATGGCAGTCTTGTGCCTTTGAGGTCTTTCCCTGCACTGGCAATAC
CAGTCCTCTCTATAAAGCCCCTTCACCTAGAGGGGTCAGCAAGTGTCAGGTGGACCATCT
GGCTTACAGTTGTAAACTTTTGATGTAGTAGAAGGAAAGTAAGCCCAGTCAATGGAAATC
ACCAAAGTCAGGGGATCTGGGGAGGGGGCTACCCCACCCCAATGAGGGAGTGGGTCTGCA
ATTTAAAACGTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               160-546, + strand, RNAz p=0.985426

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-546, + strand, RNAz p=0.985426

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-620, gnl|bosTau2|chr11 (41642861-41642241)
               

               
               6-620, gnl|Hg17|chr2 (65161553-65160990)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-620, gnl|bosTau2|chr11 (41642861-41642241)
               

               
               6-620, gnl|Hg17|chr2 (65161553-65160990)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               fhi (0.169578)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fhi (0.169578)

	6-620, gnl\|bosTau2\|chr11 (41642861-41642241)
	6-620, gnl\|Hg17\|chr2 (65161553-65160990)