Non-Coding RNA Search

Ss1.1-Mixn-0024o23.5

Sequence:


               
               GTTTCGCCTCCAGCACCGATGGCTCTGAGTAGAACCAGGATACCTCTCCCACGCAGGCTG
AGGTCCCCTGTCTCACAGTTGACATTCATCTGCCTGCCTTCCAGGTTCTATTTCACCAAC
TGGCATGGGACCAATGATAATGAGCAGTCGGTATGGCGACATTCTCCAAAGAAACAGAAA
AATGGCTACGAGAAAAAAAAAGTTCCAGATGCAACCCCTCTCCTTGATGCCAGCTCATTG
GAATATCTCTTTGCTCAGGGGCAGTACGATTTGGTCAAATGCCTGGCTCCCATTCGAGAC
CCCAAGACGGAGCAGGACGGGCATGATATTGAGAACGAGTGTCTGGGCATGGCTGTGTTG
GCCATCTCCCACTATGCCATGATGAAGAAGATGCAGTTGCCAGAACTTCCCAAGGACATC
AGCTACAAGCGATATATTCCAGAAACATTGAATAAGTCCATCAGACAGAGGAATCTTCTT
ACGAGGATGCGGATAAATAATGTTTTCAAGGATTTCCTAAAGGAGTTTAACAACAAGACC
ATTTGTGACAGTAGCGTGTCTACGCATGACCTGAAAGTGAAATACCTGGCTACCTTGGAA
ACTTTGACCAAACATTATGGTGCTGAAATATTTGAGACGTCTATGTTACTGATTTCATCG
GAAAATGAGATGAGTCGGTTTCATCCAAATGACGGTGGAAATGTTCTCTATGAGGTGATG
GTGACTGGAAATCTCGGGATCCAGTGGAGGCAGAAACCCAATGTTGTTCCCATTGAAAAG
GAAAAAAATAAACTGAAACGAAAAAAACTGGAAAGTAAACACAAGAAGGATGAGGAAAAA
AACAAAATCCGGGAAGAGTGGCACAATTTTTCGTACTTCCCTGAGATCACTCACATTGTC
ATCAAGGAGTCTGTGGTCAGCATTAACAAGCAGGACAACAAAAAAATGGAACTGAAGCTC
TCTTCCCACGAGGAGGCCTTGTCCTTCGTGTCCCTGATAGACGGCTACTTCCGGCTCACA
GCAGATGCCCATCATTACCTCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCGCCTCCAGCACCGATGGCTCTGAGTAGAACCAGGATACCTCTCCCACGCAGGCTG
AGGTCCCCTGTCTCACAGTTGACATTCATCTGCCTGCCTTCCAGGTTCTATTTCACCAAC
TGGCATGGGACCAATGATAATGAGCAGTCGGTATGGCGACATTCTCCAAAGAAACAGAAA
AATGGCTACGAGAAAAAAAAAGTTCCAGATGCAACCCCTCTCCTTGATGCCAGCTCATTG
GAATATCTCTTTGCTCAGGGGCAGTACGATTTGGTCAAATGCCTGGCTCCCATTCGAGAC
CCCAAGACGGAGCAGGACGGGCATGATATTGAGAACGAGTGTCTGGGCATGGCTGTGTTG
GCCATCTCCCACTATGCCATGATGAAGAAGATGCAGTTGCCAGAACTTCCCAAGGACATC
AGCTACAAGCGATATATTCCAGAAACATTGAATAAGTCCATCAGACAGAGGAATCTTCTT
ACGAGGATGCGGATAAATAATGTTTTCAAGGATTTCCTAAAGGAGTTTAACAACAAGACC
ATTTGTGACAGTAGCGTGTCTACGCATGACCTGAAAGTGAAATACCTGGCTACCTTGGAA
ACTTTGACCAAACATTATGGTGCTGAAATATTTGAGACGTCTATGTTACTGATTTCATCG
GAAAATGAGATGAGTCGGTTTCATCCAAATGACGGTGGAAATGTTCTCTATGAGGTGATG
GTGACTGGAAATCTCGGGATCCAGTGGAGGCAGAAACCCAATGTTGTTCCCATTGAAAAG
GAAAAAAATAAACTGAAACGAAAAAAACTGGAAAGTAAACACAAGAAGGATGAGGAAAAA
AACAAAATCCGGGAAGAGTGGCACAATTTTTCGTACTTCCCTGAGATCACTCACATTGTC
ATCAAGGAGTCTGTGGTCAGCATTAACAAGCAGGACAACAAAAAAATGGAACTGAAGCTC
TCTTCCCACGAGGAGGCCTTGTCCTTCGTGTCCCTGATAGACGGCTACTTCCGGCTCACA
GCAGATGCCCATCATTACCTCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55587190|ref|XP_513460.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55587190|ref|XP_513460.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               620-736, + strand, RNAz p=0.530238

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               620-736, + strand, RNAz p=0.530238

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-259, gnl|bosTau2|chr3 (54720353-54720610)
               

               
               1-259, gnl|Hg17|chr1 (65051326-65051073)
               

               
               1-259, gnl|Mm7|chr4 (100561028-100560775)
               


               
               421-764, gnl|bosTau2|chr3 (54725928-54726274)
               

               
               421-764, gnl|Hg17|chr1 (65044914-65044568)
               

               
               421-764, gnl|Mm7|chr4 (100556235-100555892)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-259, gnl|bosTau2|chr3 (54720353-54720610)
               

               
               1-259, gnl|Hg17|chr1 (65051326-65051073)
               

               
               1-259, gnl|Mm7|chr4 (100561028-100560775)
               


               
               421-764, gnl|bosTau2|chr3 (54725928-54726274)
               

               
               421-764, gnl|Hg17|chr1 (65044914-65044568)
               

               
               421-764, gnl|Mm7|chr4 (100556235-100555892)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.267344)
               

               
               nco (0.161734)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               nco (0.161734)

	1-259, gnl\|bosTau2\|chr3 (54720353-54720610)
	1-259, gnl\|Hg17\|chr1 (65051326-65051073)
	1-259, gnl\|Mm7\|chr4 (100561028-100560775)

	421-764, gnl\|bosTau2\|chr3 (54725928-54726274)
	421-764, gnl\|Hg17\|chr1 (65044914-65044568)
	421-764, gnl\|Mm7\|chr4 (100556235-100555892)