Non-Coding RNA Search

Ss1.1-Mixn-0024p10.5.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTGCAGAGAAAGGTTTGTTTTATTGCAATTATTTAGAGAGCACG
TCCTGAGGGGATGGGGGTGGGGGCTCTGGTATTAAGTGGAAACATGTGTGGAGCCAGAGC
TCGTGTTGGAAAAAAAGCCAAAACACAAATTCCTTTAAGTCAGCAGGCCCAGGCAGAGCA
GCAAGGGCCCGGCCTGGCGGGTCACCCCAGCCTCCCCTCCCCAGCCCACCTCTCTGGGTG
TCTCTGTCCCTCCCGTCTCAGGGGCTTCCTCTGCCCGCTCCCCAGCACCCCGTGGGAAGG
GGGCAGGACGGGGGCTCACTGGGGCACGGGCTGGTTCATGGGGGGTGGTGGGACCACCAC
GGCTTAGCGAGCGAAGGTGCCCCCGCTGCAGTCCACTGAGGCTCGGGGCGCTCTGGGCAA
GGCCCAAGGTCCATGCCCAGAGGAGGCCCGGCTGGGGACCAGGCGGCGGCTGCGGCGGAG
GGTGGGGGGTCTCAGAAGTTGCTGAAGATCTCACGCTTCCGGTTCCAGTCCATCTGTGGC
GCCCGCTTGTTGACCCTGGTGGCCCTCGCCTTCTCCTTGGCCTCAGCCGCCGTGGGGCTC
AGGTGGAGGCCACTCTCCTGGAAAGGGTCACGCTTCCAGGTGCTGCTGTCCTCAGTGTCC
TTGTCTAAGCCGGGCAGGTCACTTCGGGACGAGCACACGGAGCCACCATTGAGCTGGGCT
GAGCTGGTCCCATTGGTGACAGGTGATGGCAGTGGACCTTCCATGTGCTCCTGGGTGGGT
GTGACCCGCAGCCGCTTGAAGTACGCATCCGTCTCGGGGTCCACCACCAGCAGCCGGGCC
TCGTCCTCCCGCGCCTTGATGCAGGCAACCACCTCCGCGTGCCGCAGCCCCTCCACATTC
TGCCCGTTCACCTCTATGAGTCGGTCCTGGGCTCGGAGGCCGGAGTGGGCAGCAGGTGAG
CCTGGGTCCACGGAGCGGATGTACTGTCCAGGCCGGGACTTGTCGCTGTGCAGGTTAAAC
CCGTAACCCTGGGGGCCTTTTCGCAGGTGGCAGAGCCTTGGGCGCAGCTCCCTCAGGGGC
CCGTTGACATCCTTCTGGCCGGCCTCACCGCTGAGGCTGCCTGCGGGCGCCCAGTCCGCC
TTCGGCTCCCAGGGGTCAAGGGCAGGCGGCAGCCCTCGCTGGGCCATCTCCTCGGTGCAA
GTCAGCTGGCGCCTGCGGAGCTCCTCGTCCGTCTCCTTGTCCACAACGAGCAGCCGCGTC
TGGCCCTCCACAGCCTTGATCCGCTGCACCACCTGGTGGTGCGTCTCGCCCTCCACGTTG
ACGCCGTTGACCTCGACCAGGCGGTCCCCGGCGCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTGCAGAGAAAGGTTTGTTTTATTGCAATTATTTAGAGAGCACG
TCCTGAGGGGATGGGGGTGGGGGCTCTGGTATTAAGTGGAAACATGTGTGGAGCCAGAGC
TCGTGTTGGAAAAAAAGCCAAAACACAAATTCCTTTAAGTCAGCAGGCCCAGGCAGAGCA
GCAAGGGCCCGGCCTGGCGGGTCACCCCAGCCTCCCCTCCCCAGCCCACCTCTCTGGGTG
TCTCTGTCCCTCCCGTCTCAGGGGCTTCCTCTGCCCGCTCCCCAGCACCCCGTGGGAAGG
GGGCAGGACGGGGGCTCACTGGGGCACGGGCTGGTTCATGGGGGGTGGTGGGACCACCAC
GGCTTAGCGAGCGAAGGTGCCCCCGCTGCAGTCCACTGAGGCTCGGGGCGCTCTGGGCAA
GGCCCAAGGTCCATGCCCAGAGGAGGCCCGGCTGGGGACCAGGCGGCGGCTGCGGCGGAG
GGTGGGGGGTCTCAGAAGTTGCTGAAGATCTCACGCTTCCGGTTCCAGTCCATCTGTGGC
GCCCGCTTGTTGACCCTGGTGGCCCTCGCCTTCTCCTTGGCCTCAGCCGCCGTGGGGCTC
AGGTGGAGGCCACTCTCCTGGAAAGGGTCACGCTTCCAGGTGCTGCTGTCCTCAGTGTCC
TTGTCTAAGCCGGGCAGGTCACTTCGGGACGAGCACACGGAGCCACCATTGAGCTGGGCT
GAGCTGGTCCCATTGGTGACAGGTGATGGCAGTGGACCTTCCATGTGCTCCTGGGTGGGT
GTGACCCGCAGCCGCTTGAAGTACGCATCCGTCTCGGGGTCCACCACCAGCAGCCGGGCC
TCGTCCTCCCGCGCCTTGATGCAGGCAACCACCTCCGCGTGCCGCAGCCCCTCCACATTC
TGCCCGTTCACCTCTATGAGTCGGTCCTGGGCTCGGAGGCCGGAGTGGGCAGCAGGTGAG
CCTGGGTCCACGGAGCGGATGTACTGTCCAGGCCGGGACTTGTCGCTGTGCAGGTTAAAC
CCGTAACCCTGGGGGCCTTTTCGCAGGTGGCAGAGCCTTGGGCGCAGCTCCCTCAGGGGC
CCGTTGACATCCTTCTGGCCGGCCTCACCGCTGAGGCTGCCTGCGGGCGCCCAGTCCGCC
TTCGGCTCCCAGGGGTCAAGGGCAGGCGGCAGCCCTCGCTGGGCCATCTCCTCGGTGCAA
GTCAGCTGGCGCCTGCGGAGCTCCTCGTCCGTCTCCTTGTCCACAACGAGCAGCCGCGTC
TGGCCCTCCACAGCCTTGATCCGCTGCACCACCTGGTGGTGCGTCTCGCCCTCCACGTTG
ACGCCGTTGACCTCGACCAGGCGGTCCCCGGCGCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3550835|dbj|BAA32696.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3550835|dbj|BAA32696.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               516-652, + strand, RNAz p=0.765496

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               516-652, + strand, RNAz p=0.765496

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               337-652, gnl|bosTau2|chr25 (3014121-3014420)
               

               
               337-652, gnl|Hg17|chr16 (2028148-2027826)
               

               
               337-652, gnl|Mm7|chr17 (22820906-22821216)
               


               
               910-1079, gnl|bosTau2|chr19 (51909118-51909287)
               

               
               910-1079, gnl|Hg17|chr17 (70269909-70269740)
               

               
               910-1079, gnl|Mm7|chr11 (115285559-115285390)
               


               
               1091-1296, gnl|bosTau2|chr25 (3022283-3022488)
               

               
               1091-1296, gnl|Hg17|chr16 (2019785-2019580)
               

               
               1091-1296, gnl|Mm7|chr17 (22828437-22828642)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               337-652, gnl|bosTau2|chr25 (3014121-3014420)
               

               
               337-652, gnl|Hg17|chr16 (2028148-2027826)
               

               
               337-652, gnl|Mm7|chr17 (22820906-22821216)
               


               
               910-1079, gnl|bosTau2|chr19 (51909118-51909287)
               

               
               910-1079, gnl|Hg17|chr17 (70269909-70269740)
               

               
               910-1079, gnl|Mm7|chr11 (115285559-115285390)
               


               
               1091-1296, gnl|bosTau2|chr25 (3022283-3022488)
               

               
               1091-1296, gnl|Hg17|chr16 (2019785-2019580)
               

               
               1091-1296, gnl|Mm7|chr17 (22828437-22828642)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               nlu (0.575043)
               

               
               hyp (0.285673)
               

               
               eep (0.245128)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fbs (0.175346)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.575043)
               

               
               hyp (0.285673)
               

               
               eep (0.245128)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fbs (0.175346)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

	337-652, gnl\|bosTau2\|chr25 (3014121-3014420)
	337-652, gnl\|Hg17\|chr16 (2028148-2027826)
	337-652, gnl\|Mm7\|chr17 (22820906-22821216)

	910-1079, gnl\|bosTau2\|chr19 (51909118-51909287)
	910-1079, gnl\|Hg17\|chr17 (70269909-70269740)
	910-1079, gnl\|Mm7\|chr11 (115285559-115285390)

	1091-1296, gnl\|bosTau2\|chr25 (3022283-3022488)
	1091-1296, gnl\|Hg17\|chr16 (2019785-2019580)
	1091-1296, gnl\|Mm7\|chr17 (22828437-22828642)

	nlu (0.575043)
	hyp (0.285673)
	eep (0.245128)
	jca (0.22792)
	nms (0.213858)
	cty (0.20816)
	fbs (0.175346)
	cli (0.152812)
	lnt (0.142308)
	nmm (0.132802)
	ese (0.126502)
	jej (0.0989218)