Non-Coding RNA Search

Ss1.1-Mixn-0024p11.5

Sequence:


               
               AGTGACAACAACAATACCTCGATAACCACACCAACTCTTAGTTCCAGCCAGCAACCGCTT
CCGACAGAACTGAATGTAACTTCACCAAGTAAAGAGGAGTGTGGGCCATGCACAGATACA
GCTCATGTCTCGTTAATCACACCAACCAAAAGATCCTGTGGTACAGATTCACAGTCTGAG
AATGAGGCCTCGCCAGTGAAACGGCCACGACTACTGGAGAGTACTGAACGCCCCGAGGAA
ACCAGCCGATCCAAACAGAAAAGCCGCCGTCGGTGCTTCCAGTGCCAAACCAAACTGGAG
CTGGTGCAGCAGGAGTTGGGATCCTGCCGCTGTGGTTACGTGTTCTGTATGTTACATCGC
CTCCCCGAGCAGCACGACTGTACGTTTGACCACATGGGCCGCGGCCGAGAGGAAGCCATC
ATGAAAATGGTGAAACTGGACCGGAAAGTGGGGCGCTCTTGCCAGCGCATCGGGGAGGGG
TGCTCCTGAAGGCCGGCTCAGCCGCCACGTGACGCTGTTCTTAGTTCACTAATGTTAGCC
TTATTTAGGACAAAGTCAGCCAGACCCCTTGTACTGGGCACGCGTCAGACTACAGCCAGT
CCGTTTCCTTTCCGTAGCCAGCCATCCTGGTACTGTAGTTTAGGGGTTGATGGTGGTTGA
AATTGATTTCTGGCTGGTTACTAAGGTGCCTGCTAGCCATTGTATAAAATTAAAACATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGACAACAACAATACCTCGATAACCACACCAACTCTTAGTTCCAGCCAGCAACCGCTT
CCGACAGAACTGAATGTAACTTCACCAAGTAAAGAGGAGTGTGGGCCATGCACAGATACA
GCTCATGTCTCGTTAATCACACCAACCAAAAGATCCTGTGGTACAGATTCACAGTCTGAG
AATGAGGCCTCGCCAGTGAAACGGCCACGACTACTGGAGAGTACTGAACGCCCCGAGGAA
ACCAGCCGATCCAAACAGAAAAGCCGCCGTCGGTGCTTCCAGTGCCAAACCAAACTGGAG
CTGGTGCAGCAGGAGTTGGGATCCTGCCGCTGTGGTTACGTGTTCTGTATGTTACATCGC
CTCCCCGAGCAGCACGACTGTACGTTTGACCACATGGGCCGCGGCCGAGAGGAAGCCATC
ATGAAAATGGTGAAACTGGACCGGAAAGTGGGGCGCTCTTGCCAGCGCATCGGGGAGGGG
TGCTCCTGAAGGCCGGCTCAGCCGCCACGTGACGCTGTTCTTAGTTCACTAATGTTAGCC
TTATTTAGGACAAAGTCAGCCAGACCCCTTGTACTGGGCACGCGTCAGACTACAGCCAGT
CCGTTTCCTTTCCGTAGCCAGCCATCCTGGTACTGTAGTTTAGGGGTTGATGGTGGTTGA
AATTGATTTCTGGCTGGTTACTAAGGTGCCTGCTAGCCATTGTATAAAATTAAAACATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8R3V1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8R3V1_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               360-518, + strand, RNAz p=0.967349

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-518, + strand, RNAz p=0.967349

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_021943, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_021943, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-102, gnl|bosTau2|chr23 (11735050-11734949)
               

               
               1-102, gnl|canFam2|chr12 (10059291-10059505)
               

               
               1-102, gnl|dasNov1|scaffold_94725 (8142-7923)
               

               
               1-102, gnl|echTel1|scaffold_255515 (7-223)
               

               
               1-102, gnl|galGal2|chr3 (26036940-26036738)
               

               
               1-102, gnl|hg17|chr6 (38137324-38137538)
               

               
               1-102, gnl|Hg17|chr6 (38137430-38137531)
               

               
               1-102, gnl|loxAfr1|scaffold_16579 (36069-35855)
               

               
               1-102, gnl|mm7|chr17 (28326550-28326768)
               

               
               1-102, gnl|Mm7|chr17 (28326660-28326761)
               

               
               1-102, gnl|monDom2|scaffold_42 (7796475-7796267)
               

               
               1-102, gnl|oryCun1|scaffold_214264 (58200-58415)
               

               
               1-102, gnl|panTro1|chr5 (38635649-38635863)
               

               
               1-102, gnl|rheMac2|chr4 (37867154-37867368)
               

               
               1-102, gnl|rn3|chr20 (8457958-8458168)
               

               
               1-102, gnl|xenTro1|scaffold_702 (213309-213097)
               


               
               322-720, gnl|bosTau2|chr23 (11638496-11638097)
               

               
               322-720, gnl|Hg17|chr6 (38227975-38228375)
               

               
               322-720, gnl|Mm7|chr17 (28399261-28399657)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-102, gnl|bosTau2|chr23 (11735050-11734949)
               

               
               1-102, gnl|canFam2|chr12 (10059291-10059505)
               

               
               1-102, gnl|dasNov1|scaffold_94725 (8142-7923)
               

               
               1-102, gnl|echTel1|scaffold_255515 (7-223)
               

               
               1-102, gnl|galGal2|chr3 (26036940-26036738)
               

               
               1-102, gnl|hg17|chr6 (38137324-38137538)
               

               
               1-102, gnl|Hg17|chr6 (38137430-38137531)
               

               
               1-102, gnl|loxAfr1|scaffold_16579 (36069-35855)
               

               
               1-102, gnl|mm7|chr17 (28326550-28326768)
               

               
               1-102, gnl|Mm7|chr17 (28326660-28326761)
               

               
               1-102, gnl|monDom2|scaffold_42 (7796475-7796267)
               

               
               1-102, gnl|oryCun1|scaffold_214264 (58200-58415)
               

               
               1-102, gnl|panTro1|chr5 (38635649-38635863)
               

               
               1-102, gnl|rheMac2|chr4 (37867154-37867368)
               

               
               1-102, gnl|rn3|chr20 (8457958-8458168)
               

               
               1-102, gnl|xenTro1|scaffold_702 (213309-213097)
               


               
               322-720, gnl|bosTau2|chr23 (11638496-11638097)
               

               
               322-720, gnl|Hg17|chr6 (38227975-38228375)
               

               
               322-720, gnl|Mm7|chr17 (28399261-28399657)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.267344)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               eep (0.122564)

	1-102, gnl\|bosTau2\|chr23 (11735050-11734949)
	1-102, gnl\|canFam2\|chr12 (10059291-10059505)
	1-102, gnl\|dasNov1\|scaffold_94725 (8142-7923)
	1-102, gnl\|echTel1\|scaffold_255515 (7-223)
	1-102, gnl\|galGal2\|chr3 (26036940-26036738)
	1-102, gnl\|hg17\|chr6 (38137324-38137538)
	1-102, gnl\|Hg17\|chr6 (38137430-38137531)
	1-102, gnl\|loxAfr1\|scaffold_16579 (36069-35855)
	1-102, gnl\|mm7\|chr17 (28326550-28326768)
	1-102, gnl\|Mm7\|chr17 (28326660-28326761)
	1-102, gnl\|monDom2\|scaffold_42 (7796475-7796267)
	1-102, gnl\|oryCun1\|scaffold_214264 (58200-58415)
	1-102, gnl\|panTro1\|chr5 (38635649-38635863)
	1-102, gnl\|rheMac2\|chr4 (37867154-37867368)
	1-102, gnl\|rn3\|chr20 (8457958-8458168)
	1-102, gnl\|xenTro1\|scaffold_702 (213309-213097)

	322-720, gnl\|bosTau2\|chr23 (11638496-11638097)
	322-720, gnl\|Hg17\|chr6 (38227975-38228375)
	322-720, gnl\|Mm7\|chr17 (28399261-28399657)