Non-Coding RNA Search

Ss1.1-Mixn-0025a01.5

Sequence:


               
               GGCGGGGCCGGTGCTGGGCGAGGGCCGGGGCTCCGACGCCTTCTTCGATGCGCTGGACCA
CGTCATCGACGTGCACGGCCACATCATCGGCATGGGCCTGTCCCCCGACAACAGGTACCT
GTACGTGAACAGCCGTGCCTGGCCCCGCGGCTCGGTGGTGGCGGACCCCATGCAGCCGCC
TCCCATCGCGGAGGAGATCGACCTGCTGGTGTTCGACCTCAAGACCATGCGGGAGGTGAA
GCGGGCCCTGCGCGCCCACCGCGCCTACACGCCCAACGACGAGTGCTTCTTCATCTTCCT
GGACGTCAGCAGGGACTTCGTGGCCAGCGGGGCGGAGGATCGGCACGGCTACATCTGGGA
CCGCCACTACAACATCTGCCTGGCCAAGCTGCGGCACCAGGACGTGGTCAACTCGGTGGT
CTTCAGCCCCCAGGAGCAGGAGCTCCTGCTGACAGCCAGCGACGACGCCACCATCAAAGC
CTGGCGCTCGCCGCGCACGGTGCGCGTGCATCAGGCCTCACGCCCACGCCCGCGCCCCCT
CTTTTCCTGGTTTGCCAACCAGAGGCGCTGAAGGCGGTGGGACCCACCGAGCGCGCCGCA
GAGGCCCTTCGTTTTGTGTCCGGGTTGGCGCTGCCTGGACAGCACTGGGGGACAGAGAAG
CTCGCCACAGCCATGCCTTAGGAGGGGGGTCCAGCGAGGCCACAGCGGGGGGACTGGCCT
GACCCCCACCCCACACTCGCACACGCGCACCGCCTCCCACGGCTGGGACTCAGCGCTAGG
CCGCCAGGGGCATCTCCTGGCTGGCTTAGGGGGCACAGGACACTGGGGGCCCCGCCTCCT
CACCCACTCGCTTCCCTGGGCCTGGGCCCTGGGACAGTCAGCAGGACATGGTGCCCAGCC
AGCCCTGGGGGGGCCCAGCCTTGCCCAGGGCACCCCAGCTCTCTCCCCTGGGAGCTGCTG
GGCAGCAGGGTCACAGTGCAGGCCGGGCTGCCATGAGCCCGGGGAAGCTGCGTGTCACTG
GTCACCTGTTCAGGGTCTGAATAAACGTTCGGCAACAGTGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGGCCGGTGCTGGGCGAGGGCCGGGGCTCCGACGCCTTCTTCGATGCGCTGGACCA
CGTCATCGACGTGCACGGCCACATCATCGGCATGGGCCTGTCCCCCGACAACAGGTACCT
GTACGTGAACAGCCGTGCCTGGCCCCGCGGCTCGGTGGTGGCGGACCCCATGCAGCCGCC
TCCCATCGCGGAGGAGATCGACCTGCTGGTGTTCGACCTCAAGACCATGCGGGAGGTGAA
GCGGGCCCTGCGCGCCCACCGCGCCTACACGCCCAACGACGAGTGCTTCTTCATCTTCCT
GGACGTCAGCAGGGACTTCGTGGCCAGCGGGGCGGAGGATCGGCACGGCTACATCTGGGA
CCGCCACTACAACATCTGCCTGGCCAAGCTGCGGCACCAGGACGTGGTCAACTCGGTGGT
CTTCAGCCCCCAGGAGCAGGAGCTCCTGCTGACAGCCAGCGACGACGCCACCATCAAAGC
CTGGCGCTCGCCGCGCACGGTGCGCGTGCATCAGGCCTCACGCCCACGCCCGCGCCCCCT
CTTTTCCTGGTTTGCCAACCAGAGGCGCTGAAGGCGGTGGGACCCACCGAGCGCGCCGCA
GAGGCCCTTCGTTTTGTGTCCGGGTTGGCGCTGCCTGGACAGCACTGGGGGACAGAGAAG
CTCGCCACAGCCATGCCTTAGGAGGGGGGTCCAGCGAGGCCACAGCGGGGGGACTGGCCT
GACCCCCACCCCACACTCGCACACGCGCACCGCCTCCCACGGCTGGGACTCAGCGCTAGG
CCGCCAGGGGCATCTCCTGGCTGGCTTAGGGGGCACAGGACACTGGGGGCCCCGCCTCCT
CACCCACTCGCTTCCCTGGGCCTGGGCCCTGGGACAGTCAGCAGGACATGGTGCCCAGCC
AGCCCTGGGGGGGCCCAGCCTTGCCCAGGGCACCCCAGCTCTCTCCCCTGGGAGCTGCTG
GGCAGCAGGGTCACAGTGCAGGCCGGGCTGCCATGAGCCCGGGGAAGCTGCGTGTCACTG
GTCACCTGTTCAGGGTCTGAATAAACGTTCGGCAACAGTGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34853032|ref|XP_342384.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34853032|ref|XP_342384.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               484-603, - strand, RNAz p=0.576186
               

               
               867-968, - strand, RNAz p=0.999961

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               484-603, - strand, RNAz p=0.576186
               

               
               867-968, - strand, RNAz p=0.999961

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-116, gnl|bosTau2|chr11 (86266178-86266064)
               

               
               2-116, gnl|Hg17|chr9 (137111938-137111824)
               

               
               2-116, gnl|Mm7|chr2 (25511526-25511640)
               


               
               324-1058, gnl|bosTau2|chr11 (86265693-86264953)
               

               
               324-1058, gnl|Hg17|chr9 (137111464-137110726)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-116, gnl|bosTau2|chr11 (86266178-86266064)
               

               
               2-116, gnl|Hg17|chr9 (137111938-137111824)
               

               
               2-116, gnl|Mm7|chr2 (25511526-25511640)
               


               
               324-1058, gnl|bosTau2|chr11 (86265693-86264953)
               

               
               324-1058, gnl|Hg17|chr9 (137111464-137110726)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               nep (0.36785)
               

               
               cga (0.279096)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.36785)
               

               
               cga (0.279096)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	484-603, - strand, RNAz p=0.576186
	867-968, - strand, RNAz p=0.999961

	2-116, gnl\|bosTau2\|chr11 (86266178-86266064)
	2-116, gnl\|Hg17\|chr9 (137111938-137111824)
	2-116, gnl\|Mm7\|chr2 (25511526-25511640)

	324-1058, gnl\|bosTau2\|chr11 (86265693-86264953)
	324-1058, gnl\|Hg17\|chr9 (137111464-137110726)

	nep (0.36785)
	cga (0.279096)
	fcc (0.197785)
	mcp (0.170648)
	nje (0.16592)
	cov (0.132153)
	eep (0.122564)
	ebs (0.118301)
	med (0.116252)
	cty (0.10408)