Non-Coding RNA Search

Ss1.1-Mixn-0025a05.5

Sequence:


               
               CCCCAGGGGCCTTACCGATACCCCGCTCCTGATGGGCCTAGCCGTTTCCCCCGTGTGGCA
GGCCCCCGAGGCTCAGGGCCACCAATGCGCCTCGTAGAGCCTGTGGGTCGGCCTTCCATT
CTTAAAGAAGATAATCTCAAAGAGTTTGACCAGTTGGACCAGGAGAATGATGATGGTTGG
GCAGGGGCCCATGAGGAGGTCGACTACACTGAGAAGCTCAAGTTCAGCGATGAGGAAGAC
GGGCGAGACTCTGATGAGGAGGGAGCTGAGGGCCACAAGGAGTCCCAGGCAGCTGGCGGT
GAGGAACGGCCCCCTGAAGCAGATGGCAAAAAGGGCAACTCCCCCGGCAGCGAACCGCCC
CCTCCCAAGACGGCCTGGGCAGAGACCTCTCGGCCTCCAGAGACAGAGCCGGGGCCTCCT
GCCCCAAAGCCTCCCCCACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCCT
GGGGACTACCCAGATCGAGGGGGCCCTCCCTGCAAGCCCCCAGCACCTGAAGACGAGGAT
GAGGCATGGCGACAGCGGCGGAAGCAGTCTTCATCTGAGATCTCCCTGGCTGTGGAGCGG
GCCCGGCGGCGGCGAGAGGAGGAGGAGCGACGCATGCAAGAGGAGCGCAGGGCTGCCTGT
GCCGAGAAGCTCAAGCGACTTGATGAGAAGTTTGGGGCACCCGACAAGCGGCTCAAGGCA
GAGCCTGCGGCACCACCCGCTGTCCCTCCTGCCCCCGCTCCACCACCTGCAGTCCCCAAA
GAACTCCCCAGACCTCCAGCACCTTCACCGGCACCAGTCCCAACACCTGAAAAAGAACCA
GAAGAGCCGGCACAGGCCCCTCCTGCCCAGTCCACCCCCACTCCAGGTGTGGCTCCAGCT
CCCACCCTGGTGAGTGGTGGTGGCAGTACCAGTAGCACCAGCAGTGGCAGCTTCGAAGCC
AGCCCAGTGGAACCCCAGCTGCCCTCAAAAGAGGGTCCTGAATCACCAGAAGAGGTTCCT
GCACCTGCCACACCGCCAGCACCAAAGGTGGAACCCAAGGGTGATGGGATTGGTCCTACC
CGGCAGCCCCCCAGCCAAGGCTTAGGCTACCCTAAATATCAGAAGTCATTGCCGCCTCGT
TTCCAGCGGCAACAGCAGGAGCAGCTCTTAAAGCAGCAACAACAGCAGCAGTGGCAGCAG
CATCAACAGGGCTCTGCCCCACCTGCCCCAGTACCCCCGTCACCACCACAGCCTGTGACT
ATGGGGGCTGTGCCGGCTCCACAGGCTGCTCCACCACCCCCAAAGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCAGGGGCCTTACCGATACCCCGCTCCTGATGGGCCTAGCCGTTTCCCCCGTGTGGCA
GGCCCCCGAGGCTCAGGGCCACCAATGCGCCTCGTAGAGCCTGTGGGTCGGCCTTCCATT
CTTAAAGAAGATAATCTCAAAGAGTTTGACCAGTTGGACCAGGAGAATGATGATGGTTGG
GCAGGGGCCCATGAGGAGGTCGACTACACTGAGAAGCTCAAGTTCAGCGATGAGGAAGAC
GGGCGAGACTCTGATGAGGAGGGAGCTGAGGGCCACAAGGAGTCCCAGGCAGCTGGCGGT
GAGGAACGGCCCCCTGAAGCAGATGGCAAAAAGGGCAACTCCCCCGGCAGCGAACCGCCC
CCTCCCAAGACGGCCTGGGCAGAGACCTCTCGGCCTCCAGAGACAGAGCCGGGGCCTCCT
GCCCCAAAGCCTCCCCCACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCCT
GGGGACTACCCAGATCGAGGGGGCCCTCCCTGCAAGCCCCCAGCACCTGAAGACGAGGAT
GAGGCATGGCGACAGCGGCGGAAGCAGTCTTCATCTGAGATCTCCCTGGCTGTGGAGCGG
GCCCGGCGGCGGCGAGAGGAGGAGGAGCGACGCATGCAAGAGGAGCGCAGGGCTGCCTGT
GCCGAGAAGCTCAAGCGACTTGATGAGAAGTTTGGGGCACCCGACAAGCGGCTCAAGGCA
GAGCCTGCGGCACCACCCGCTGTCCCTCCTGCCCCCGCTCCACCACCTGCAGTCCCCAAA
GAACTCCCCAGACCTCCAGCACCTTCACCGGCACCAGTCCCAACACCTGAAAAAGAACCA
GAAGAGCCGGCACAGGCCCCTCCTGCCCAGTCCACCCCCACTCCAGGTGTGGCTCCAGCT
CCCACCCTGGTGAGTGGTGGTGGCAGTACCAGTAGCACCAGCAGTGGCAGCTTCGAAGCC
AGCCCAGTGGAACCCCAGCTGCCCTCAAAAGAGGGTCCTGAATCACCAGAAGAGGTTCCT
GCACCTGCCACACCGCCAGCACCAAAGGTGGAACCCAAGGGTGATGGGATTGGTCCTACC
CGGCAGCCCCCCAGCCAAGGCTTAGGCTACCCTAAATATCAGAAGTCATTGCCGCCTCGT
TTCCAGCGGCAACAGCAGGAGCAGCTCTTAAAGCAGCAACAACAGCAGCAGTGGCAGCAG
CATCAACAGGGCTCTGCCCCACCTGCCCCAGTACCCCCGTCACCACCACAGCCTGTGACT
ATGGGGGCTGTGCCGGCTCCACAGGCTGCTCCACCACCCCCAAAGGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26386324|dbj|BAB31715.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26386324|dbj|BAB31715.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               812-928, - strand, RNAz p=0.913337

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               812-928, - strand, RNAz p=0.913337

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               40-185, gnl|bosTau2|chr23 (23292143-23292288)
               

               
               40-185, gnl|Hg17|chr6 (31701774-31701919)
               

               
               40-185, gnl|Mm7|chr17 (33257745-33257600)
               


               
               493-967, gnl|bosTau2|chr23 (23293547-23294021)
               

               
               493-967, gnl|Hg17|chr6 (31703521-31703995)
               

               
               493-967, gnl|Mm7|chr17 (33256562-33256085)
               


               
               521-691, gnl|bosTau2|chr11 (82041859-82042033)
               

               
               521-691, gnl|Hg17|chr9 (131369731-131369905)
               

               
               521-691, gnl|Mm7|chr2 (32211347-32211521)
               


               
               1156-1308, gnl|bosTau2|chr23 (23294874-23295026)
               

               
               1156-1308, gnl|Hg17|chr6 (31705301-31705453)
               

               
               1156-1308, gnl|Mm7|chr17 (33255331-33255176)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-185, gnl|bosTau2|chr23 (23292143-23292288)
               

               
               40-185, gnl|Hg17|chr6 (31701774-31701919)
               

               
               40-185, gnl|Mm7|chr17 (33257745-33257600)
               


               
               493-967, gnl|bosTau2|chr23 (23293547-23294021)
               

               
               493-967, gnl|Hg17|chr6 (31703521-31703995)
               

               
               493-967, gnl|Mm7|chr17 (33256562-33256085)
               


               
               521-691, gnl|bosTau2|chr11 (82041859-82042033)
               

               
               521-691, gnl|Hg17|chr9 (131369731-131369905)
               

               
               521-691, gnl|Mm7|chr2 (32211347-32211521)
               


               
               1156-1308, gnl|bosTau2|chr23 (23294874-23295026)
               

               
               1156-1308, gnl|Hg17|chr6 (31705301-31705453)
               

               
               1156-1308, gnl|Mm7|chr17 (33255331-33255176)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	40-185, gnl\|bosTau2\|chr23 (23292143-23292288)
	40-185, gnl\|Hg17\|chr6 (31701774-31701919)
	40-185, gnl\|Mm7\|chr17 (33257745-33257600)

	493-967, gnl\|bosTau2\|chr23 (23293547-23294021)
	493-967, gnl\|Hg17\|chr6 (31703521-31703995)
	493-967, gnl\|Mm7\|chr17 (33256562-33256085)

	521-691, gnl\|bosTau2\|chr11 (82041859-82042033)
	521-691, gnl\|Hg17\|chr9 (131369731-131369905)
	521-691, gnl\|Mm7\|chr2 (32211347-32211521)

	1156-1308, gnl\|bosTau2\|chr23 (23294874-23295026)
	1156-1308, gnl\|Hg17\|chr6 (31705301-31705453)
	1156-1308, gnl\|Mm7\|chr17 (33255331-33255176)