Non-Coding RNA Search

Ss1.1-Mixn-0025b07.5

Sequence:


               
               GCCGTCCCTATAACCATCTAGTTCCGAGTACAAACTGGAGACAGAAATAAATATTAAAGA
AATCATAGCCCGACCAGGTAAAGGCAAAGGGATGAATTCCTACTTCACCAACCCTTCCTT
ATCCTGCCACCTCGCCGGGGGCCAGGACGTCCTCCCCAACGTCGCCCTCAATTCCACCGC
CTATGATCCAGTGAGGCATTTCTCGACCTATGGAGCAGCCGTTGCCCAGAACCGGATCTA
CTCGACTCCCTTTTATTCGCCACAGGAGAATGTCGTGTTCAGTTCCAGCCGGGGGCCGTA
TGACTATGGATCTAATTCCTTTTACCAGGAGAAAGACATGCTCTCTAACTGCAGACAAAA
CACCTTAGGACATAACACACAGACCTCAATCGCTCAGGATTTTAGTTCTGAGCAGGGCAG
GACTGCGCCCCAGGACCAGAAAGCCAGTATCCAGATTTACCCCTGGATGCAGCGAATGAA
TTCGCACAGTGGGGTCGGCTATGGAGCGGACCGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGTCCCTATAACCATCTAGTTCCGAGTACAAACTGGAGACAGAAATAAATATTAAAGA
AATCATAGCCCGACCAGGTAAAGGCAAAGGGATGAATTCCTACTTCACCAACCCTTCCTT
ATCCTGCCACCTCGCCGGGGGCCAGGACGTCCTCCCCAACGTCGCCCTCAATTCCACCGC
CTATGATCCAGTGAGGCATTTCTCGACCTATGGAGCAGCCGTTGCCCAGAACCGGATCTA
CTCGACTCCCTTTTATTCGCCACAGGAGAATGTCGTGTTCAGTTCCAGCCGGGGGCCGTA
TGACTATGGATCTAATTCCTTTTACCAGGAGAAAGACATGCTCTCTAACTGCAGACAAAA
CACCTTAGGACATAACACACAGACCTCAATCGCTCAGGATTTTAGTTCTGAGCAGGGCAG
GACTGCGCCCCAGGACCAGAAAGCCAGTATCCAGATTTACCCCTGGATGCAGCGAATGAA
TTCGCACAGTGGGGTCGGCTATGGAGCGGACCGGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62526077|dbj|BAD95555.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62526077|dbj|BAD95555.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.664918
               

               
               360-492, - strand, RNAz p=0.964646

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.664918
               

               
               360-492, - strand, RNAz p=0.964646

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-492, gnl|bosTau2|chr5 (16755794-16755303)
               

               
               1-492, gnl|Hg17|chr12 (52708482-52708973)
               

               
               1-492, gnl|Mm7|chr15 (102995671-102996162)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr5 (16755794-16755303)
               

               
               1-492, gnl|Hg17|chr12 (52708482-52708973)
               

               
               1-492, gnl|Mm7|chr15 (102995671-102996162)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	80-199, - strand, RNAz p=0.664918
	360-492, - strand, RNAz p=0.964646

	1-492, gnl\|bosTau2\|chr5 (16755794-16755303)
	1-492, gnl\|Hg17\|chr12 (52708482-52708973)
	1-492, gnl\|Mm7\|chr15 (102995671-102996162)