Ss1.1-Mixn-0025c22.5
|
CGTGCTGGTATAAACCAGACCTCAAAAGGCTTTTCCTGTTAATTCACAGTTCATTGTGCC
TCTTGTATTCAGAGGGAAGAGAAGCTGATTTAGTAATCTCGATGGATGCAATACTGAATT
ACAAATCGGAAGATACTGAAGATTACTACACGTTGCTGGGTTGTGATGAACTGTCTTCGG
TTGAACAAATCCTGGCAGAATTTAAGGTCAGGGCCCTGGAATGTCACCCTGACAAGCATC
CTGAAAACTCCAAAGCTGTGGAGACTTTTCAGAAACTACAGAATGCAAAGGAGATTTTGA
CTAATGAAGCGAGTCGAGCCCGCTACGACCACTGGCGAAGGAGCCAGATTTCGATGCCGT
TTCAGCAGTGGGAAGCTTTGAGTGACTCGGTGAAAACGTCAATGCACTGGGCTGTCAGAG
GTAAAAAAGATCTGATGCTGGAAGAATCTGACCAGACTCATACCAACAAAATGGAAAATC
AGGAATGGAATGAGCAAAAAGAAATAAAGAAAGAGGAGCTGGATTCAACCACAGAGAAAA
TGGAGCAAAAAGAATCAAATTCCCTGGAGAAGTCATTCTCCCCACAAAATTCAGATTCTC
CAAGTTTGTCGGATGTGAACTGCTGGCACTTTCGTTTCCGCTGGTCTAGGGATGCTCCTT
CAGAACTGCTGAGGAAATTCAGAAACTATGAAATATGAAATGTCCATACTGAGAGAAACA
GTGCAAGATCATCTTCTGTGTTGAAAACATGCAGTCTTTGTTCAGATCTTTAAAGTATCA
TGTTTGTGAATTGCTGAATACCAGTTCATTCCCCCATCCTTGAAACCATTCTCCCAATGT
GTTTTTTAAATGAGAAAATTTTCAGATTAGTTTCTTTAAATATTTGAATAAATTAATGCT
CTCAGATCCAGATTAGATTGTTTGTTTTCCTGTTAATGTTATTTGTAGAAATCCATGAAA
AAAACTGTTCTCTGTATTTAAATATTTCATTGATATACCATGATCTTTACTAGTACTGGA
TATACAAGAAATGTTTTCTGATTGTGGACTTAAACTGAGATGTGAAATTACTTGCCAAAA
CTTCATTGAATGAAATAAATAGTTTACCCAAAGTTCAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGTGCTGGTATAAACCAGACCTCAAAAGGCTTTTCCTGTTAATTCACAGTTCATTGTGCC
TCTTGTATTCAGAGGGAAGAGAAGCTGATTTAGTAATCTCGATGGATGCAATACTGAATT
ACAAATCGGAAGATACTGAAGATTACTACACGTTGCTGGGTTGTGATGAACTGTCTTCGG
TTGAACAAATCCTGGCAGAATTTAAGGTCAGGGCCCTGGAATGTCACCCTGACAAGCATC
CTGAAAACTCCAAAGCTGTGGAGACTTTTCAGAAACTACAGAATGCAAAGGAGATTTTGA
CTAATGAAGCGAGTCGAGCCCGCTACGACCACTGGCGAAGGAGCCAGATTTCGATGCCGT
TTCAGCAGTGGGAAGCTTTGAGTGACTCGGTGAAAACGTCAATGCACTGGGCTGTCAGAG
GTAAAAAAGATCTGATGCTGGAAGAATCTGACCAGACTCATACCAACAAAATGGAAAATC
AGGAATGGAATGAGCAAAAAGAAATAAAGAAAGAGGAGCTGGATTCAACCACAGAGAAAA
TGGAGCAAAAAGAATCAAATTCCCTGGAGAAGTCATTCTCCCCACAAAATTCAGATTCTC
CAAGTTTGTCGGATGTGAACTGCTGGCACTTTCGTTTCCGCTGGTCTAGGGATGCTCCTT
CAGAACTGCTGAGGAAATTCAGAAACTATGAAATATGAAATGTCCATACTGAGAGAAACA
GTGCAAGATCATCTTCTGTGTTGAAAACATGCAGTCTTTGTTCAGATCTTTAAAGTATCA
TGTTTGTGAATTGCTGAATACCAGTTCATTCCCCCATCCTTGAAACCATTCTCCCAATGT
GTTTTTTAAATGAGAAAATTTTCAGATTAGTTTCTTTAAATATTTGAATAAATTAATGCT
CTCAGATCCAGATTAGATTGTTTGTTTTCCTGTTAATGTTATTTGTAGAAATCCATGAAA
AAAACTGTTCTCTGTATTTAAATATTTCATTGATATACCATGATCTTTACTAGTACTGGA
TATACAAGAAATGTTTTCTGATTGTGGACTTAAACTGAGATGTGAAATTACTTGCCAAAA
CTTCATTGAATGAAATAAATAGTTTACCCAAAGTTCAAAAAAAAAAAA
|
|
gi|27806569|ref|NP_776521.1| |
Protein identifier
|
gi|27806569|ref|NP_776521.1| |
|
258-396, gnl|bosTau2|chr28 (17492733-17492871) |
|
258-396, gnl|canFam2|chr4 (22320929-22321101) |
|
258-396, gnl|dasNov1|scaffold_141337 (2793-2620) |
|
258-396, gnl|echTel1|scaffold_79026 (1819-1992) |
|
258-396, gnl|fr1|chrUn (289214623-289214424) |
|
258-396, gnl|hg17|chr10 (69241283-69241456) |
|
258-396, gnl|Hg17|chr10 (69241428-69241290) |
|
258-396, gnl|loxAfr1|scaffold_37223 (5024-5192) |
|
258-396, gnl|mm7|chr10 (62916172-62915999) |
|
258-396, gnl|Mm7|chr10 (62916025-62916163) |
|
258-396, gnl|monDom2|scaffold_67 (8966708-8966883) |
|
258-396, gnl|oryCun1|scaffold_174956 (15284-15457) |
|
258-396, gnl|panTro1|chr8_random (37576140-37576313) |
|
258-396, gnl|rheMac2|chr9 (69450712-69450539) |
|
258-396, gnl|rn3|chr20 (25757003-25756833) |
|
258-396, gnl|tetNig1|chr17 (981695-981519) |
|
258-396, gnl|xenTro1|scaffold_228 (948023-947861) |
| |
|
596-1120, gnl|bosTau2|chr28 (17509163-17509696) |
|
596-1120, gnl|Hg17|chr10 (69226982-69226429) |
|
596-1120, gnl|Mm7|chr10 (62926995-62927642) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
258-396, gnl|bosTau2|chr28 (17492733-17492871) |
|
258-396, gnl|canFam2|chr4 (22320929-22321101) |
|
258-396, gnl|dasNov1|scaffold_141337 (2793-2620) |
|
258-396, gnl|echTel1|scaffold_79026 (1819-1992) |
|
258-396, gnl|fr1|chrUn (289214623-289214424) |
|
258-396, gnl|hg17|chr10 (69241283-69241456) |
|
258-396, gnl|Hg17|chr10 (69241428-69241290) |
|
258-396, gnl|loxAfr1|scaffold_37223 (5024-5192) |
|
258-396, gnl|mm7|chr10 (62916172-62915999) |
|
258-396, gnl|Mm7|chr10 (62916025-62916163) |
|
258-396, gnl|monDom2|scaffold_67 (8966708-8966883) |
|
258-396, gnl|oryCun1|scaffold_174956 (15284-15457) |
|
258-396, gnl|panTro1|chr8_random (37576140-37576313) |
|
258-396, gnl|rheMac2|chr9 (69450712-69450539) |
|
258-396, gnl|rn3|chr20 (25757003-25756833) |
|
258-396, gnl|tetNig1|chr17 (981695-981519) |
|
258-396, gnl|xenTro1|scaffold_228 (948023-947861) |
| |
|
596-1120, gnl|bosTau2|chr28 (17509163-17509696) |
|
596-1120, gnl|Hg17|chr10 (69226982-69226429) |
|
596-1120, gnl|Mm7|chr10 (62926995-62927642) |
|
mgm (1.44274) |
|
mga (0.801025) |
|
pro (0.512033) |
|
mgp (0.461361) |
|
fli (0.405762) |
|
sme (0.305437) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
mas (0.210305) |
|
gul (0.177588) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fco (0.157208) |
|
lun (0.150489) |
|
fat (0.147427) |
|
ski (0.146735) |
|
liv (0.146284) |
|
lin (0.145603) |
|
ssp (0.13552) |
|
ute (0.132784) |
|
ret (0.128733) |
|
cbr (0.127975) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
mgm (1.44274) |
|
mga (0.801025) |
|
pro (0.512033) |
|
mgp (0.461361) |
|
fli (0.405762) |
|
sme (0.305437) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
mas (0.210305) |
|
gul (0.177588) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fco (0.157208) |
|
lun (0.150489) |
|
fat (0.147427) |
|
ski (0.146735) |
|
liv (0.146284) |
|
lin (0.145603) |
|
ssp (0.13552) |
|
ute (0.132784) |
|
ret (0.128733) |
|
cbr (0.127975) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
spc (0.113366) |
