Non-Coding RNA Search

Ss1.1-Mixn-0025e16.5

Sequence:


               
               GGCCAGACCAACACCCCACCACCGTTTGAGATCTTCTTCTGCTTTGGGGAGGAGTGGCCT
GACTGCAAACCCCGAGAGAAGAAGCTCATCACTGTACAGGTGGTGCCCGTTGCAGCTCGA
CTGCTTCTGGAGATGTTCTCAGGGGAGCTTTCTTGGTCAGCTGATAGTATCCGGCTACAG
ATCTCAAACCCAGACCTCAAAGACCGCATGGTCGAACAGTTCAAGGAGCTCCATCACATC
TGGCAGTCCCAGCAGCAGATGCAACCCATGGCCCAAGCCCCTCCTGTGCCAGGCCTCAGC
GCTGGCCAGGGGCCCTGGCCCATGCATCCAGTCAGCATGCAGTAATGAGGCTGTAGACTG
GCCCAGGCTTCCCGGGTGGCTGTGCAGACTGAGGAGGAGGTGCGACAGCCCCCATGGGCA
CCTGATGAGCAGCAGGGTCCAATCTCTGGGTCTCCTGAAAGTGGATTTGGGCCATGAAGA
GGGAAAGAGGCCCGAGTTCGTTTCTCCTCAGAAGCTGGGAGAAGCGTTTTGCTTTGAGGG
CTCTGTCTTCCTGGCTGTGCTGGGCTGGCTGTGGCAGAACTCAGCCATTAGCACCAGTGA
GGAGGGAAGAAACTCACCCAGGAACCCTGGGGGGCCTAGCCACACAGAGGGAGCTGCCCC
AGAGTGGCCCATTCTTGTGGCTGCCCCCATTTCTTCTGGCAAAAAGAACCAAGTGCTCTG
GATCAGGTCTCCCTGGCAGGTCCTTTGCAGGGCACAGGCCTGACTTTGGGGTTCCCTAGT
TTAAGCCTCGCTTCATCTTTCTCCCTCCAGAGATAGATATGAGCACTTAGGTATTATACC
AGGTACTTAAGGCTAGCAGCTACCTCCTTGAGAGTCCAAGAACCTGGGGCAGAAAGTGGA
ATTTTATGTATTTTTGGGATTAATAAATGTTAAAAACAGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCAGACCAACACCCCACCACCGTTTGAGATCTTCTTCTGCTTTGGGGAGGAGTGGCCT
GACTGCAAACCCCGAGAGAAGAAGCTCATCACTGTACAGGTGGTGCCCGTTGCAGCTCGA
CTGCTTCTGGAGATGTTCTCAGGGGAGCTTTCTTGGTCAGCTGATAGTATCCGGCTACAG
ATCTCAAACCCAGACCTCAAAGACCGCATGGTCGAACAGTTCAAGGAGCTCCATCACATC
TGGCAGTCCCAGCAGCAGATGCAACCCATGGCCCAAGCCCCTCCTGTGCCAGGCCTCAGC
GCTGGCCAGGGGCCCTGGCCCATGCATCCAGTCAGCATGCAGTAATGAGGCTGTAGACTG
GCCCAGGCTTCCCGGGTGGCTGTGCAGACTGAGGAGGAGGTGCGACAGCCCCCATGGGCA
CCTGATGAGCAGCAGGGTCCAATCTCTGGGTCTCCTGAAAGTGGATTTGGGCCATGAAGA
GGGAAAGAGGCCCGAGTTCGTTTCTCCTCAGAAGCTGGGAGAAGCGTTTTGCTTTGAGGG
CTCTGTCTTCCTGGCTGTGCTGGGCTGGCTGTGGCAGAACTCAGCCATTAGCACCAGTGA
GGAGGGAAGAAACTCACCCAGGAACCCTGGGGGGCCTAGCCACACAGAGGGAGCTGCCCC
AGAGTGGCCCATTCTTGTGGCTGCCCCCATTTCTTCTGGCAAAAAGAACCAAGTGCTCTG
GATCAGGTCTCCCTGGCAGGTCCTTTGCAGGGCACAGGCCTGACTTTGGGGTTCCCTAGT
TTAAGCCTCGCTTCATCTTTCTCCCTCCAGAGATAGATATGAGCACTTAGGTATTATACC
AGGTACTTAAGGCTAGCAGCTACCTCCTTGAGAGTCCAAGAACCTGGGGCAGAAAGTGGA
ATTTTATGTATTTTTGGGATTAATAAATGTTAAAAACAGAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               257-370, - strand, RNAz p=0.938515

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-370, - strand, RNAz p=0.938515

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               98-786, gnl|bosTau2|chr4 (50002498-50001792)
               

               
               98-786, gnl|Hg17|chr7 (128182576-128183232)
               

               
               98-786, gnl|Mm7|chr6 (29468684-29469351)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-786, gnl|bosTau2|chr4 (50002498-50001792)
               

               
               98-786, gnl|Hg17|chr7 (128182576-128183232)
               

               
               98-786, gnl|Mm7|chr6 (29468684-29469351)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               amn (0.417711)
               

               
               cag (0.302389)
               

               
               lnt (0.284616)
               

               
               csp (0.161186)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cag (0.302389)
               

               
               lnt (0.284616)
               

               
               csp (0.161186)

	98-786, gnl\|bosTau2\|chr4 (50002498-50001792)
	98-786, gnl\|Hg17\|chr7 (128182576-128183232)
	98-786, gnl\|Mm7\|chr6 (29468684-29469351)