Ss1.1-Mixn-0025j06.5
|
TCGCAGAAGTGCATCGGGGCCTCGCCAAAGCGCAGCTTCAGCAGCTCCACGTTGCGGATC
TCCCGCTCGGGGCTGAAGCTGAACTGGTGCAGGAGGCGGTCGGCCAGCAGCGAGCGGTAC
TCGTTGATGAAGAGGTCCTTGCTGCCGTAGATGCTGACCAGCAGGCTGATGATGTCCGAG
GAGCGCCGTCTGGAGCTGGACTTGCCTGGGTCTGCGTCCACAGGATCGGGCACCCAGTCC
TCCGGCTCGCCAGAGTCGTCCTCGCTGTCCTGGCCGGTCTCCAGGCTTGCCGGGTCTGTC
TTGGACAGCTCGACAGCCAGGTCCCCCGTGCCATCCGAGTCCCCGGTCAGCCCCGCCACG
ATCTGCCGCACCGTGTCCTCACGCGTCCTCAGGTAACGGCGGATGGGCTCACAGGCCACG
TCCAGGACGACCATGGATGGGTCCAGCGCGCGCAGCGCCTTGATGGCAGAGATGTACAGG
GTGATGATGTCGCAGGTGCTCACGCCTGGGTGGAGGAGCCGCGTCTCCAGAGCAGCCTTG
AGGGACACGAGCAGCTGCTGCCGCTGGTCGGTCCTCTCCAGGCAGTATTTGAGGTCCTCG
ATGGCCGGCCGGGAGTCTGGGAAGTCTCGGATGATGCTGAAGAGCTCCTCGATGCGCAGA
CCCGCGTAGATGCGGTAGAAGAACCTCTGCACGTGGCAGCGCCAGCGGCGCAGCGTGCTG
CCGGCCTCCGCCGACGCGGGCCTGGAGGGGCCTTCCTGCAGGAACACCTTGCCCAGCCAG
CCGACCACCCTCTCGATCCACTTGTGGAACTCGCGCAAGAAGGAGCGCTCGTACTCGCCC
CGGCAGCGGTCCTCCATCCTCTCCCGGGTCGCCTGGCGCAGGGAGCTGGTCACGGCCTCC
GCGCTGACCCGCTCCAGCAGACTGAGCCTGTGTAGGACTTGGCTGAGGTGGTGGAACTGC
TCCAGCGCCTGGCGGCACCAGCACTGTTGCTTGTCACTGCCACACCCGGCGCACAGCGGG
CTCTGCAGAAGGCGGTAGTACCGGCGACGGGCGTACCTGCTGTCCAACTCCCCCTCCAGT
TCAGGATCTGTGCCCCCTTCCCCTTTTCTCTTACTCTGCATGTATACCCTCAAAAAGCGC
CCATAGAGACGCTGGATCATCTCCTGGAAAGGTCTGGGGGTGGAAAAGAACAGGACGCCC
CGCACGGTGGTGTGGACCTTTTCGCGAAGGCCCTGGGCACCAGTGCCCATGAGCAAGCCC
AGGCGAGTCCACTTCTCCAGGAGCTCTAGACTCCGCAGGTAGGGATCCAGGCGGCTCTCC
AGCAGACCGAAAGCATCGAGGAGCAGCAGAAGGCACTGGGGCTCGTCCGCGCAGTTCTCG
CGCTGGGAGATGGTATTCCAGAACTCGAGGGCGATGCTGGCCTGCAGGTCATTCTGGAGC
ACCTCTACGAACCATTCCTCCAGGACCGAGTGCAGTCCGTGGCTCCTGAGAACCTCCACC
GCCGCCCGGAGCTCCTCCTCCTTTGGAGGGACCGCGCCGCTGGTCCGGGAGGATGCCAGT
CCCAGTGCGGCCGGCGGCACCAGCCCGGTGCTCACGGTATTCCACGCTACCAGCAGCTCC
TGGGCAGGCCCGGGGTCGTTCTGCTGCTCCGCCGCCGCCATCTGCGCCCACCAGCTCCCA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCGCAGAAGTGCATCGGGGCCTCGCCAAAGCGCAGCTTCAGCAGCTCCACGTTGCGGATC
TCCCGCTCGGGGCTGAAGCTGAACTGGTGCAGGAGGCGGTCGGCCAGCAGCGAGCGGTAC
TCGTTGATGAAGAGGTCCTTGCTGCCGTAGATGCTGACCAGCAGGCTGATGATGTCCGAG
GAGCGCCGTCTGGAGCTGGACTTGCCTGGGTCTGCGTCCACAGGATCGGGCACCCAGTCC
TCCGGCTCGCCAGAGTCGTCCTCGCTGTCCTGGCCGGTCTCCAGGCTTGCCGGGTCTGTC
TTGGACAGCTCGACAGCCAGGTCCCCCGTGCCATCCGAGTCCCCGGTCAGCCCCGCCACG
ATCTGCCGCACCGTGTCCTCACGCGTCCTCAGGTAACGGCGGATGGGCTCACAGGCCACG
TCCAGGACGACCATGGATGGGTCCAGCGCGCGCAGCGCCTTGATGGCAGAGATGTACAGG
GTGATGATGTCGCAGGTGCTCACGCCTGGGTGGAGGAGCCGCGTCTCCAGAGCAGCCTTG
AGGGACACGAGCAGCTGCTGCCGCTGGTCGGTCCTCTCCAGGCAGTATTTGAGGTCCTCG
ATGGCCGGCCGGGAGTCTGGGAAGTCTCGGATGATGCTGAAGAGCTCCTCGATGCGCAGA
CCCGCGTAGATGCGGTAGAAGAACCTCTGCACGTGGCAGCGCCAGCGGCGCAGCGTGCTG
CCGGCCTCCGCCGACGCGGGCCTGGAGGGGCCTTCCTGCAGGAACACCTTGCCCAGCCAG
CCGACCACCCTCTCGATCCACTTGTGGAACTCGCGCAAGAAGGAGCGCTCGTACTCGCCC
CGGCAGCGGTCCTCCATCCTCTCCCGGGTCGCCTGGCGCAGGGAGCTGGTCACGGCCTCC
GCGCTGACCCGCTCCAGCAGACTGAGCCTGTGTAGGACTTGGCTGAGGTGGTGGAACTGC
TCCAGCGCCTGGCGGCACCAGCACTGTTGCTTGTCACTGCCACACCCGGCGCACAGCGGG
CTCTGCAGAAGGCGGTAGTACCGGCGACGGGCGTACCTGCTGTCCAACTCCCCCTCCAGT
TCAGGATCTGTGCCCCCTTCCCCTTTTCTCTTACTCTGCATGTATACCCTCAAAAAGCGC
CCATAGAGACGCTGGATCATCTCCTGGAAAGGTCTGGGGGTGGAAAAGAACAGGACGCCC
CGCACGGTGGTGTGGACCTTTTCGCGAAGGCCCTGGGCACCAGTGCCCATGAGCAAGCCC
AGGCGAGTCCACTTCTCCAGGAGCTCTAGACTCCGCAGGTAGGGATCCAGGCGGCTCTCC
AGCAGACCGAAAGCATCGAGGAGCAGCAGAAGGCACTGGGGCTCGTCCGCGCAGTTCTCG
CGCTGGGAGATGGTATTCCAGAACTCGAGGGCGATGCTGGCCTGCAGGTCATTCTGGAGC
ACCTCTACGAACCATTCCTCCAGGACCGAGTGCAGTCCGTGGCTCCTGAGAACCTCCACC
GCCGCCCGGAGCTCCTCCTCCTTTGGAGGGACCGCGCCGCTGGTCCGGGAGGATGCCAGT
CCCAGTGCGGCCGGCGGCACCAGCCCGGTGCTCACGGTATTCCACGCTACCAGCAGCTCC
TGGGCAGGCCCGGGGTCGTTCTGCTGCTCCGCCGCCGCCATCTGCGCCCACCAGCTCCCA |
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gi|61830016|ref|XP_584525.1| |
Protein identifier
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gi|61830016|ref|XP_584525.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
205-389, gnl|bosTau2|chr11 (85495535-85495351) |
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205-389, gnl|canFam2|chr9 (51812392-51812216) |
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205-389, gnl|danRer3|chrNA (168398541-168398339) |
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205-389, gnl|dasNov1|scaffold_118038 (925-1115) |
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205-389, gnl|fr1|chrUn (131776747-131776948) |
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205-389, gnl|galGal2|chr17 (9091893-9092101) |
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205-389, gnl|hg17|chr9 (137351964-137352171) |
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205-389, gnl|Hg17|chr9 (137351969-137352153) |
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205-389, gnl|mm7|chr2 (25285824-25285616) |
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205-389, gnl|Mm7|chr2 (25285817-25285633) |
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205-389, gnl|monDom2|scaffold_1 (186994529-186994736) |
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205-389, gnl|panTro1|chrUn_random (14418351-14418144) |
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205-389, gnl|rheMac2|chr15 (1063266-1063060) |
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205-389, gnl|rn3|chr3 (3441792-3441586) |
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205-389, gnl|tetNig1|chr3 (14015795-14015982) |
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205-389, gnl|xenTro1|scaffold_375 (1024973-1024784) |
| |
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626-802, gnl|bosTau2|chr11 (85493928-85493752) |
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626-802, gnl|Hg17|chr9 (137355202-137355378) |
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626-802, gnl|Mm7|chr2 (25282151-25281975) |
| |
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934-1557, gnl|bosTau2|chr11 (85491612-85490989) |
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934-1557, gnl|Hg17|chr9 (137357770-137358393) |
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934-1557, gnl|Mm7|chr2 (25280848-25280225) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
205-389, gnl|bosTau2|chr11 (85495535-85495351) |
|
205-389, gnl|canFam2|chr9 (51812392-51812216) |
|
205-389, gnl|danRer3|chrNA (168398541-168398339) |
|
205-389, gnl|dasNov1|scaffold_118038 (925-1115) |
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205-389, gnl|fr1|chrUn (131776747-131776948) |
|
205-389, gnl|galGal2|chr17 (9091893-9092101) |
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205-389, gnl|hg17|chr9 (137351964-137352171) |
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205-389, gnl|Hg17|chr9 (137351969-137352153) |
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205-389, gnl|mm7|chr2 (25285824-25285616) |
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205-389, gnl|Mm7|chr2 (25285817-25285633) |
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205-389, gnl|monDom2|scaffold_1 (186994529-186994736) |
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205-389, gnl|panTro1|chrUn_random (14418351-14418144) |
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205-389, gnl|rheMac2|chr15 (1063266-1063060) |
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205-389, gnl|rn3|chr3 (3441792-3441586) |
|
205-389, gnl|tetNig1|chr3 (14015795-14015982) |
|
205-389, gnl|xenTro1|scaffold_375 (1024973-1024784) |
| |
|
626-802, gnl|bosTau2|chr11 (85493928-85493752) |
|
626-802, gnl|Hg17|chr9 (137355202-137355378) |
|
626-802, gnl|Mm7|chr2 (25282151-25281975) |
| |
|
934-1557, gnl|bosTau2|chr11 (85491612-85490989) |
|
934-1557, gnl|Hg17|chr9 (137357770-137358393) |
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934-1557, gnl|Mm7|chr2 (25280848-25280225) |
|
pty (0.142714) |
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nmm (0.132802) |
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clu (0.119646) |
|
pty (0.142714) |
|
nmm (0.132802) |
|
clu (0.119646) |
