Non-Coding RNA Search

Ss1.1-Mixn-0025j24.5

Sequence:


               
               GCGGCACCGCGAGAAGGAGGAGTACATTAGCCGGCTGGCTCAGGACAAAGACAAATGAAG
GTGAAGCTGCTGGAGCTCCAGGAGCTGGTGTTACACCTGGTGGGCGAGCGCAATGAATGG
CAAGGCAAATTCCTGGCTGCCCAGAACCCTGCTGGGGAGCCCACCGTGGCGCCCCCAGCC
CCCCAGGAGCTTGGCGCTGCTGAGAACCAGGGTGGTCTCCTGGAGGTGAGCCTCTCGGAC
AATGTGGAGCCCACCCAAGGGGAGGCCCTGCTGGGCCAGACCCTCACCGAGAACCCCACC
GCGCAGCAGATCATGCAGCTGCTGCGCGAGATCCAGAACCCCCAGGAGCGCCTGGGCTTG
GGCAGCAACCCCTGCATCCCCTTTTTCTACCGGGCTGACGACAACGACGAGGTGAAGATC
ATGGTGGTCTAAGTGCCTGAGGCTGGCAGGCAAAGACCGGAGAACTGGGGCCGGGGGCTC
TGCCCCCACCCGTCCCCGCCACCCTGTCCCTCCTCCCTGCCCTCCTTCCCAGTCACGTCG
TCATCCTAGACTAGCAAGCTAACGCCCCTGGAAAGGGGAACAAGCCCCCCCCTCTAATGG
GGGGAGACACATAGGTGCAGACCCCTGGCCGTCTTGGCCAGGGCTGTGTCTTGATCTCTG
GACGATTAATAGTTCCAGAAAAACAAAGAGCCAGAGGCTCGGTAAAGACAGTTGATTTAG
GAGGCTGCCCTTCTCGGGGAGCAGGGGCTCCCTGGTAGCCTCTTCACCCCATCAAGCAGT
CCTTCATTAAAGAGGGCTTATGCATCCTCTATTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCACCGCGAGAAGGAGGAGTACATTAGCCGGCTGGCTCAGGACAAAGACAAATGAAG
GTGAAGCTGCTGGAGCTCCAGGAGCTGGTGTTACACCTGGTGGGCGAGCGCAATGAATGG
CAAGGCAAATTCCTGGCTGCCCAGAACCCTGCTGGGGAGCCCACCGTGGCGCCCCCAGCC
CCCCAGGAGCTTGGCGCTGCTGAGAACCAGGGTGGTCTCCTGGAGGTGAGCCTCTCGGAC
AATGTGGAGCCCACCCAAGGGGAGGCCCTGCTGGGCCAGACCCTCACCGAGAACCCCACC
GCGCAGCAGATCATGCAGCTGCTGCGCGAGATCCAGAACCCCCAGGAGCGCCTGGGCTTG
GGCAGCAACCCCTGCATCCCCTTTTTCTACCGGGCTGACGACAACGACGAGGTGAAGATC
ATGGTGGTCTAAGTGCCTGAGGCTGGCAGGCAAAGACCGGAGAACTGGGGCCGGGGGCTC
TGCCCCCACCCGTCCCCGCCACCCTGTCCCTCCTCCCTGCCCTCCTTCCCAGTCACGTCG
TCATCCTAGACTAGCAAGCTAACGCCCCTGGAAAGGGGAACAAGCCCCCCCCTCTAATGG
GGGGAGACACATAGGTGCAGACCCCTGGCCGTCTTGGCCAGGGCTGTGTCTTGATCTCTG
GACGATTAATAGTTCCAGAAAAACAAAGAGCCAGAGGCTCGGTAAAGACAGTTGATTTAG
GAGGCTGCCCTTCTCGGGGAGCAGGGGCTCCCTGGTAGCCTCTTCACCCCATCAAGCAGT
CCTTCATTAAAGAGGGCTTATGCATCCTCTATTCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56126476|gb|AAV76025.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56126476|gb|AAV76025.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               214-373, - strand, RNAz p=0.997789
               

               
               570-792, + strand, RNAz p=0.999866

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               214-373, - strand, RNAz p=0.997789
               

               
               570-792, + strand, RNAz p=0.999866

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX647920, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX647920, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               214-816, gnl|bosTau2|chr11 (78151024-78150436)
               

               
               214-816, gnl|Hg17|chr9 (128099115-128098002)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               214-816, gnl|bosTau2|chr11 (78151024-78150436)
               

               
               214-816, gnl|Hg17|chr9 (128099115-128098002)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	214-373, - strand, RNAz p=0.997789
	570-792, + strand, RNAz p=0.999866

	214-816, gnl\|bosTau2\|chr11 (78151024-78150436)
	214-816, gnl\|Hg17\|chr9 (128099115-128098002)