Non-Coding RNA Search

Ss1.1-Mixn-0025k11.5

Sequence:


               
               TTTTTTTTTAAAGTGGGTACAAAATAATTTATTTAACACTGTACAATTCAGGAGGGTGGG
ATGCGCACCGGGGGCCTGGGCACCCCTACCCCTGCCCTCTGTTCCCTGATCACCCAAGGG
AAGGGGCCAGCCCCACCTGAGCAAGGGAAGGAGCTGTGGTGAAATGTGAAGAAAAAATGG
AGATGGAGAGCCTCCTCCGTTTTCAGCAAGGGGCTGGTCCTGCCGGCCGTTCACAGTGTG
TACAAGGAGGGGCCTCACCAAGCCGTCTCTCCTGGGCCTCCGTTTCCCCATCTCCATGAT
GGGAGGTGGGGATGGGTCTTAGGGCCCATAGGAACCTGTGATTCTCGGGAGCTCAGGGGA
CCTTTTTGTCCACCCCATAGGACCCAGCCCCAGAGAGGGAGGCAAGTGAGCCCCGTGGGG
TAGGGAGATGCTGGGGCTCCTCCAGAATCCCGGGCAGGACCCCAGATACCTGCTACACCT
GTGACCCCAGCGGTGGGCTGGGCATCCACACGTGGAGCTGGTGACCCTAGTTGTCAGCCA
GGGACCCAAATGAGTAGGTCGTGGCAGCAGTGGTGGTGGCAGGGGGCCGGGACAGGCAGC
GCAGGCTCCCCGTCTTGAGAGCACACTGCACAGGCCACAGCACCACGCAGAAGAGCACAA
GCAGCAAGGCTGTAATGAGTGCCACCCGTCTCCAGTCCCCGCAGCGTGCCCAGCAGCGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTAAAGTGGGTACAAAATAATTTATTTAACACTGTACAATTCAGGAGGGTGGG
ATGCGCACCGGGGGCCTGGGCACCCCTACCCCTGCCCTCTGTTCCCTGATCACCCAAGGG
AAGGGGCCAGCCCCACCTGAGCAAGGGAAGGAGCTGTGGTGAAATGTGAAGAAAAAATGG
AGATGGAGAGCCTCCTCCGTTTTCAGCAAGGGGCTGGTCCTGCCGGCCGTTCACAGTGTG
TACAAGGAGGGGCCTCACCAAGCCGTCTCTCCTGGGCCTCCGTTTCCCCATCTCCATGAT
GGGAGGTGGGGATGGGTCTTAGGGCCCATAGGAACCTGTGATTCTCGGGAGCTCAGGGGA
CCTTTTTGTCCACCCCATAGGACCCAGCCCCAGAGAGGGAGGCAAGTGAGCCCCGTGGGG
TAGGGAGATGCTGGGGCTCCTCCAGAATCCCGGGCAGGACCCCAGATACCTGCTACACCT
GTGACCCCAGCGGTGGGCTGGGCATCCACACGTGGAGCTGGTGACCCTAGTTGTCAGCCA
GGGACCCAAATGAGTAGGTCGTGGCAGCAGTGGTGGTGGCAGGGGGCCGGGACAGGCAGC
GCAGGCTCCCCGTCTTGAGAGCACACTGCACAGGCCACAGCACCACGCAGAAGAGCACAA
GCAGCAAGGCTGTAATGAGTGCCACCCGTCTCCAGTCCCCGCAGCGTGCCCAGCAGCGCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               230-331, - strand, RNAz p=0.999975

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-331, - strand, RNAz p=0.999975

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               13-425, gnl|bosTau2|chr16 (41224632-41224218)
               

               
               13-425, gnl|Hg17|chr1 (1046269-1046974)
               

               
               13-425, gnl|Mm7|chr4 (155122963-155122570)
               


               
               512-718, gnl|bosTau2|chr16 (41224168-41223968)
               

               
               512-718, gnl|Hg17|chr1 (1047104-1047314)
               

               
               512-718, gnl|Mm7|chr4 (155122494-155122276)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-425, gnl|bosTau2|chr16 (41224632-41224218)
               

               
               13-425, gnl|Hg17|chr1 (1046269-1046974)
               

               
               13-425, gnl|Mm7|chr4 (155122963-155122570)
               


               
               512-718, gnl|bosTau2|chr16 (41224168-41223968)
               

               
               512-718, gnl|Hg17|chr1 (1047104-1047314)
               

               
               512-718, gnl|Mm7|chr4 (155122494-155122276)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               col (0.195008)
               

               
               fbs (0.175346)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               fbs (0.175346)

	13-425, gnl\|bosTau2\|chr16 (41224632-41224218)
	13-425, gnl\|Hg17\|chr1 (1046269-1046974)
	13-425, gnl\|Mm7\|chr4 (155122963-155122570)

	512-718, gnl\|bosTau2\|chr16 (41224168-41223968)
	512-718, gnl\|Hg17\|chr1 (1047104-1047314)
	512-718, gnl\|Mm7\|chr4 (155122494-155122276)