Non-Coding RNA Search

Ss1.1-Mixn-0025k12.5

Sequence:


               
               TCCTGGGTGTCCAAGCCCAGGGGTCGTCTTGCTACTCTTGCCTCAGCCGCCTGCGGTTAC
CTTCTCCGCCCGGTCTTGTTGCTGTCGCCGCCTTCGTCTGCACCATGGCTTTCGCAACCA
GGCAGCTCGTGCGCTCCTTGTCCTCCTCGTCCACCGCCGCGGCCTCGGCGAAGAAAATCC
TCGTCAAGCACGTGACGGTCATCGGCGGCGGGCTGATGGGCGCAGGCATTGCCCAGGTTG
CTGCAGCAACTGGCCACACGGTAGTGTTGGTAGATCAAACAGAGGACATCCTAGCAAAAT
CTAAAAAGGGAATTGAGGAAAGCCTTCGGAAAGTGGCCAAGAAGAAGTTTGCGGAAAACC
CCAAGGCTGGCGATGAATTCGTGGAGAAGACCCTGAGCAGCATATCCACCAGCACGGACG
CAGCATCCGTGGTCCACAGCACAGACCTGGTGGTGGAGGCCATCGTGGAGAACCTGAAGG
TGAAGAGCGAGCTCTTCAAGAGGCTGGACAAGTTTGCTGCTGAACACACAATCTTTGCCA
GCAACACTTCCTCTTTGCAGATCACAAGCCTAGCCAATGCCACCACCAGACAGGACCGAT
TTGCCGGGCTCCATTTCTTCAACCCAGTGCCCTTGATGAAACTTGTGGAGGTCGTCAAAA
CACCAATGACCAGCCAGAAGACATTGGAATCTCTGGTAGACTTCAGCAAAACCCTGGGAA
AGCATCCTGTTTCTTGCAAGGACACTCCTGGGTTTATCGTGAACCGTCTCCTGGTGCCGT
ACCTCATAGAAGCAGTCAGGCTGTACGAACGAGGTGACGCATCCAAGGAAGACATTGATA
CTGCTATGAAGCTGGGTGCTGGGTACCCCATGGGCCCATTTGAACTTCTCGATTATGTTG
GACTGGATACTACCAAGTTCATCATAGATGGGTGGCATGAAATGGATTCACAGAACCCCC
TGTTTCAGCCCAGCCCAGCCATGAATAAGCTGGTAGCGGAGAATAAGTTTGGCAAGAAGA
CTGGAGAAGGATTTTACAAATACAAATGAGGCGCAGCTTCTCTGGCTCCTAGAGGAAGCC
CCGTAAGCACATACCAGCAGCTCCCCAAGTGCCCTCGGGAATGCTCTTTGGCCAGACGTT
CCCCACACAGCATGATCTGTTCAGTGTGCATTTTGATTGTAATCTATCTGAACTAATTAC
ACTAGTTACAGTAATAGCAGATTTCTCCATTGAGAACAAATTCTCTTAGTCTGTTCATTT
CTGTGTATTTTCCCAAAAGCTTTAACACCCTTGGTGCCTTGGAACGAACATTTCTTCCGA
ACCTTCGTTTTTGTAACGTTGCCTGAAGTCACTCACTTGTAAAGGGAAGACACTTCCTGA
AAGCATCTCATGTTCATTGCTGCCACACGGCAGAGTCTCAAGCCACTGACACGTCATGGT
GTGTCTGAAGGGCTGTGCGAGCAGCACCTGCATCGCCTTTACCAGAATGTTCGCTGCCTG
CAGCTCCCAGCCTTACGCCACGTTTTGGGTACGATGTCAGCTGTCGGGTCTCGATTCAAC
TCATCCTCAAGACACTGCTTCTGGGTCAGTGGGAATATCCCCATGTGCTTGGTTGTGGGA
AGAGGTTTCACTCACGTCCAAAATCTGCATAGTGTCCGTCCATCTCTCTCTTTTTTTCAT
GAGAAATCATTGCTACAATTTGAGTCTAATAAAATGCAGTCTTTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGGGTGTCCAAGCCCAGGGGTCGTCTTGCTACTCTTGCCTCAGCCGCCTGCGGTTAC
CTTCTCCGCCCGGTCTTGTTGCTGTCGCCGCCTTCGTCTGCACCATGGCTTTCGCAACCA
GGCAGCTCGTGCGCTCCTTGTCCTCCTCGTCCACCGCCGCGGCCTCGGCGAAGAAAATCC
TCGTCAAGCACGTGACGGTCATCGGCGGCGGGCTGATGGGCGCAGGCATTGCCCAGGTTG
CTGCAGCAACTGGCCACACGGTAGTGTTGGTAGATCAAACAGAGGACATCCTAGCAAAAT
CTAAAAAGGGAATTGAGGAAAGCCTTCGGAAAGTGGCCAAGAAGAAGTTTGCGGAAAACC
CCAAGGCTGGCGATGAATTCGTGGAGAAGACCCTGAGCAGCATATCCACCAGCACGGACG
CAGCATCCGTGGTCCACAGCACAGACCTGGTGGTGGAGGCCATCGTGGAGAACCTGAAGG
TGAAGAGCGAGCTCTTCAAGAGGCTGGACAAGTTTGCTGCTGAACACACAATCTTTGCCA
GCAACACTTCCTCTTTGCAGATCACAAGCCTAGCCAATGCCACCACCAGACAGGACCGAT
TTGCCGGGCTCCATTTCTTCAACCCAGTGCCCTTGATGAAACTTGTGGAGGTCGTCAAAA
CACCAATGACCAGCCAGAAGACATTGGAATCTCTGGTAGACTTCAGCAAAACCCTGGGAA
AGCATCCTGTTTCTTGCAAGGACACTCCTGGGTTTATCGTGAACCGTCTCCTGGTGCCGT
ACCTCATAGAAGCAGTCAGGCTGTACGAACGAGGTGACGCATCCAAGGAAGACATTGATA
CTGCTATGAAGCTGGGTGCTGGGTACCCCATGGGCCCATTTGAACTTCTCGATTATGTTG
GACTGGATACTACCAAGTTCATCATAGATGGGTGGCATGAAATGGATTCACAGAACCCCC
TGTTTCAGCCCAGCCCAGCCATGAATAAGCTGGTAGCGGAGAATAAGTTTGGCAAGAAGA
CTGGAGAAGGATTTTACAAATACAAATGAGGCGCAGCTTCTCTGGCTCCTAGAGGAAGCC
CCGTAAGCACATACCAGCAGCTCCCCAAGTGCCCTCGGGAATGCTCTTTGGCCAGACGTT
CCCCACACAGCATGATCTGTTCAGTGTGCATTTTGATTGTAATCTATCTGAACTAATTAC
ACTAGTTACAGTAATAGCAGATTTCTCCATTGAGAACAAATTCTCTTAGTCTGTTCATTT
CTGTGTATTTTCCCAAAAGCTTTAACACCCTTGGTGCCTTGGAACGAACATTTCTTCCGA
ACCTTCGTTTTTGTAACGTTGCCTGAAGTCACTCACTTGTAAAGGGAAGACACTTCCTGA
AAGCATCTCATGTTCATTGCTGCCACACGGCAGAGTCTCAAGCCACTGACACGTCATGGT
GTGTCTGAAGGGCTGTGCGAGCAGCACCTGCATCGCCTTTACCAGAATGTTCGCTGCCTG
CAGCTCCCAGCCTTACGCCACGTTTTGGGTACGATGTCAGCTGTCGGGTCTCGATTCAAC
TCATCCTCAAGACACTGCTTCTGGGTCAGTGGGAATATCCCCATGTGCTTGGTTGTGGGA
AGAGGTTTCACTCACGTCCAAAATCTGCATAGTGTCCGTCCATCTCTCTCTTTTTTTCAT
GAGAAATCATTGCTACAATTTGAGTCTAATAAAATGCAGTCTTTAAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               HCDH_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               HCDH_PIG

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               2-1197, gnl|bosTau2|chr26 (689417-690610)
               

               
               2-1197, gnl|Hg17|chr15 (54272794-54271687)
               


               
               1248-1724, gnl|bosTau2|chr26 (690752-691215)
               

               
               1248-1724, gnl|Hg17|chr15 (54271629-54271124)
               

               
               1248-1724, gnl|Mm7|chr3 (131070481-131069986)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1197, gnl|bosTau2|chr26 (689417-690610)
               

               
               2-1197, gnl|Hg17|chr15 (54272794-54271687)
               


               
               1248-1724, gnl|bosTau2|chr26 (690752-691215)
               

               
               1248-1724, gnl|Hg17|chr15 (54271629-54271124)
               

               
               1248-1724, gnl|Mm7|chr3 (131070481-131069986)

Expressed library(ies): 51 entry(ies)

More info

Expressed library(ies): 51 entry(ies)

Help | Less info


               
               sme (1.52718)
               

               
               cki (0.991408)
               

               
               cli (0.91687)
               

               
               che (0.817884)
               

               
               ldo (0.776021)
               

               
               hea (0.613497)
               

               
               jej (0.593531)
               

               
               ssp (0.542079)
               

               
               cov (0.528611)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               eep (0.490256)
               

               
               nco (0.485201)
               

               
               lun (0.451467)
               

               
               hlv (0.417769)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               ill (0.351185)
               

               
               ton (0.351)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               eje (0.296501)
               

               
               cst (0.280073)
               

               
               sug (0.254582)
               

               
               cly (0.241284)
               

               
               pgl (0.236967)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 51 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (1.52718)
               

               
               cki (0.991408)
               

               
               cli (0.91687)
               

               
               che (0.817884)
               

               
               ldo (0.776021)
               

               
               hea (0.613497)
               

               
               jej (0.593531)
               

               
               ssp (0.542079)
               

               
               cov (0.528611)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               eep (0.490256)
               

               
               nco (0.485201)
               

               
               lun (0.451467)
               

               
               hlv (0.417769)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               ill (0.351185)
               

               
               ton (0.351)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               eje (0.296501)
               

               
               cst (0.280073)
               

               
               sug (0.254582)
               

               
               cly (0.241284)
               

               
               pgl (0.236967)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	2-1197, gnl\|bosTau2\|chr26 (689417-690610)
	2-1197, gnl\|Hg17\|chr15 (54272794-54271687)

	1248-1724, gnl\|bosTau2\|chr26 (690752-691215)
	1248-1724, gnl\|Hg17\|chr15 (54271629-54271124)
	1248-1724, gnl\|Mm7\|chr3 (131070481-131069986)

	sme (1.52718)
	cki (0.991408)
	cli (0.91687)
	che (0.817884)
	ldo (0.776021)
	hea (0.613497)
	jej (0.593531)
	ssp (0.542079)
	cov (0.528611)
	sin (0.524843)
	pro (0.512033)
	eep (0.490256)
	nco (0.485201)
	lun (0.451467)
	hlv (0.417769)
	kid (0.389206)
	bla (0.373042)
	ill (0.351185)
	ton (0.351)
	vin (0.332557)
	nje (0.33184)
	eje (0.296501)
	cst (0.280073)
	sug (0.254582)
	cly (0.241284)
	pgl (0.236967)
	nms (0.213858)
	tes (0.207814)
	nlu (0.191681)
	fbs (0.175346)
	duo (0.172801)
	cut (0.169924)
	tbr (0.154178)
	eli (0.151814)
	cag (0.151194)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	lin (0.145603)
	pty (0.142714)
	lnt (0.142308)
	nca (0.136874)
	ste (0.135208)
	lyg (0.133103)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	clu (0.119646)
	med (0.116252)
	cty (0.10408)
	nbm (0.0993246)