Non-Coding RNA Search

Ss1.1-Mixn-0025n15.5

Sequence:


               
               GCAGTCACGTGCAGGTGCCCACCGACCCCTGGATGAGGTGAACTAGGCCCACAGAAAGTC
AGGGCCCCAAAGAACTGGTACAGTCCGTGTTTCTCTGCATCAACCCTCCCAATTAAAGAT
GCTCATGAAGAGTGATGTGTGGAGCTGGCAGGTCTTGTGGCCACAGGAGATGCTTGTGTG
CCCTGAGCCGGCCTTGGAGAAAGGGCGAGAGGCCCAGGGCATCTTGGAAATGGTTCACAT
TCCGGCTTAGGAACTCTGTTCCAAGTCTGAGGATTCTTGAATTTTTTGAACCCCTCTGCA
AGGTGGTGCTAGTTGTGTACCATTGTGGCTGAAGGTTTCTATCTCCACAGACATTTGACG
TAACTCCCAGAAAGTTCCTTGCTTCTTAGGACAGGTCAGGACCTGTCTGGGAGGCGATGC
ATTACCGTGCAGAACAGTAACAGAGGACCCAGTGCCGAAGGGCTTGTCTTAGGAAAGTAC
TGCTCCTTTACATTAACCAGGAAACCTCTTTTTTTTAATCTGTTGTTCACAACTCGTTTT
CTTATTGACTGTATTGGACCGTCTCTTCTTGTAGAGACTGATTTTGGCCAACATGTGGCA
GTTGATATTAATGCATGTTTTATGCAGAACAAGAATATGATATTAGTTGCTTTTAAGGAA
TTCTGGCATTGTATGTGCATTTTTGTAGAATTGTTACTGGACTTATAATTATATACTTAA
CTCTAATCAGGTTTCTGTAAAATTTAAATAAAACCAATTCAAAATAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTCACGTGCAGGTGCCCACCGACCCCTGGATGAGGTGAACTAGGCCCACAGAAAGTC
AGGGCCCCAAAGAACTGGTACAGTCCGTGTTTCTCTGCATCAACCCTCCCAATTAAAGAT
GCTCATGAAGAGTGATGTGTGGAGCTGGCAGGTCTTGTGGCCACAGGAGATGCTTGTGTG
CCCTGAGCCGGCCTTGGAGAAAGGGCGAGAGGCCCAGGGCATCTTGGAAATGGTTCACAT
TCCGGCTTAGGAACTCTGTTCCAAGTCTGAGGATTCTTGAATTTTTTGAACCCCTCTGCA
AGGTGGTGCTAGTTGTGTACCATTGTGGCTGAAGGTTTCTATCTCCACAGACATTTGACG
TAACTCCCAGAAAGTTCCTTGCTTCTTAGGACAGGTCAGGACCTGTCTGGGAGGCGATGC
ATTACCGTGCAGAACAGTAACAGAGGACCCAGTGCCGAAGGGCTTGTCTTAGGAAAGTAC
TGCTCCTTTACATTAACCAGGAAACCTCTTTTTTTTAATCTGTTGTTCACAACTCGTTTT
CTTATTGACTGTATTGGACCGTCTCTTCTTGTAGAGACTGATTTTGGCCAACATGTGGCA
GTTGATATTAATGCATGTTTTATGCAGAACAAGAATATGATATTAGTTGCTTTTAAGGAA
TTCTGGCATTGTATGTGCATTTTTGTAGAATTGTTACTGGACTTATAATTATATACTTAA
CTCTAATCAGGTTTCTGTAAAATTTAAATAAAACCAATTCAAAATAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               488-638, - strand, RNAz p=0.998028

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               488-638, - strand, RNAz p=0.998028

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-766, gnl|bosTau2|chr21 (38622451-38621700)
               

               
               15-766, gnl|Hg17|chr14 (92764555-92765314)
               

               
               15-766, gnl|Mm7|chr12 (100272341-100273001)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-766, gnl|bosTau2|chr21 (38622451-38621700)
               

               
               15-766, gnl|Hg17|chr14 (92764555-92765314)
               

               
               15-766, gnl|Mm7|chr12 (100272341-100273001)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               eye (0.341006)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	15-766, gnl\|bosTau2\|chr21 (38622451-38621700)
	15-766, gnl\|Hg17\|chr14 (92764555-92765314)
	15-766, gnl\|Mm7\|chr12 (100272341-100273001)

	eye (0.341006)
	cte (0.29274)
	cbe (0.239234)
	rec (0.17307)
	cki (0.165235)
	mga (0.160205)
	csk (0.140746)
	che (0.136314)
	thg (0.126791)
	ecc (0.115035)
	cty (0.10408)