Non-Coding RNA Search

Ss1.1-Mixn-0025o06.5

Sequence:


               
               TTTCATAAATGGTCAGAAGAGTGATTGGGTTGAGACTTGGGGCACCCCAGGCCTAAAGGG
AAGTGGCCATGAGGCTAACCCTCCTGTGTTCTCTCAGGTGCTCAGGGATCTAAGTTAGTG
GACAGAGAGCCTGTGGCCACAGGTGGTGAAGTTCCTATTCCAGCACCTCCCAGCCATGTG
ACTCCCTCTCCATGCTGAGTTGCCATCACCTGCTTCATGCTTATTCACACAAAAGGCATG
TGTGTCACACTAGTATTGAGGGAGTTGAGACTTTTCTGTCCTAAAATTTCTACCTAGCTT
TTTTTTGGGGGGGAGGGTGCCTGATTTGATTTTTCTGACCTAGCCTTGTGGGCACCTAGG
GTGAAGAGGCCTAAATAAAGATGCAAAGTGAGGGACAAGGAATAGAAAGGTAGAGAGAAT
CACTGAGGAAGCCCTTTTAGCCCACAGCCAATCCAGATCTCTCTCACTTAGACATCAGAA
GCGACAGCGAGGGCTGGGAATGGAGGGGAGGGCTTCAAGGGGATATTTCCTGATTTGAAA
CCTCTCCTGGGGTTCTTGGTTTTGAGAAATCAGCTGCCAAACATGTGAGTGAAAAGGGAA
GATCAGAGCAAACTTTTTCTGGTCAGTTCTAAGGTCACTAGAGACAGGTGCCAGGCTTGT
AGCTCCACTCTCAGTAGCCAGCCCCAGGTCTGGACCCTCACAGGACAGCCAGGCCAGACC
AAGATGGATTTTCCAGGATACAGAGAGGGGAAAGAAAGGTCCTCCTCCTGGGAGGAAAGA
GGGACATCTCACACTTGATGGGGCAATAAAAGAAGGAGCACTTTGGGTCCTCAGACTCGT
GGTTGGGGATGGGGAGGGAGTAGCAAAGTGGCATTTTCTTGAATGGAAAGGGGAAAGGTC
TTATTGCACTTGGGCTGTTCAGAATGTAGAAAGGACATATTTGAAGAAATATCTATTTGA
GCACTGATTTACATGTAAAAAGCAAAATCTCTCTGTCCTAAACTAATGGAAGTGATTCTC
CCATGCTCATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCATAAATGGTCAGAAGAGTGATTGGGTTGAGACTTGGGGCACCCCAGGCCTAAAGGG
AAGTGGCCATGAGGCTAACCCTCCTGTGTTCTCTCAGGTGCTCAGGGATCTAAGTTAGTG
GACAGAGAGCCTGTGGCCACAGGTGGTGAAGTTCCTATTCCAGCACCTCCCAGCCATGTG
ACTCCCTCTCCATGCTGAGTTGCCATCACCTGCTTCATGCTTATTCACACAAAAGGCATG
TGTGTCACACTAGTATTGAGGGAGTTGAGACTTTTCTGTCCTAAAATTTCTACCTAGCTT
TTTTTTGGGGGGGAGGGTGCCTGATTTGATTTTTCTGACCTAGCCTTGTGGGCACCTAGG
GTGAAGAGGCCTAAATAAAGATGCAAAGTGAGGGACAAGGAATAGAAAGGTAGAGAGAAT
CACTGAGGAAGCCCTTTTAGCCCACAGCCAATCCAGATCTCTCTCACTTAGACATCAGAA
GCGACAGCGAGGGCTGGGAATGGAGGGGAGGGCTTCAAGGGGATATTTCCTGATTTGAAA
CCTCTCCTGGGGTTCTTGGTTTTGAGAAATCAGCTGCCAAACATGTGAGTGAAAAGGGAA
GATCAGAGCAAACTTTTTCTGGTCAGTTCTAAGGTCACTAGAGACAGGTGCCAGGCTTGT
AGCTCCACTCTCAGTAGCCAGCCCCAGGTCTGGACCCTCACAGGACAGCCAGGCCAGACC
AAGATGGATTTTCCAGGATACAGAGAGGGGAAAGAAAGGTCCTCCTCCTGGGAGGAAAGA
GGGACATCTCACACTTGATGGGGCAATAAAAGAAGGAGCACTTTGGGTCCTCAGACTCGT
GGTTGGGGATGGGGAGGGAGTAGCAAAGTGGCATTTTCTTGAATGGAAAGGGGAAAGGTC
TTATTGCACTTGGGCTGTTCAGAATGTAGAAAGGACATATTTGAAGAAATATCTATTTGA
GCACTGATTTACATGTAAAAAGCAAAATCTCTCTGTCCTAAACTAATGGAAGTGATTCTC
CCATGCTCATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               484-602, + strand, RNAz p=0.952943

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               484-602, + strand, RNAz p=0.952943

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               572-661, + strand, RNAmicro p=0.995223

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               572-661, + strand, RNAmicro p=0.995223

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002334, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002334, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-1032, gnl|bosTau2|chr15 (49424072-49425123)
               

               
               7-1032, gnl|Hg17|chr11 (46836109-46835111)
               

               
               7-1032, gnl|Mm7|chr2 (91363471-91364501)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1032, gnl|bosTau2|chr15 (49424072-49425123)
               

               
               7-1032, gnl|Hg17|chr11 (46836109-46835111)
               

               
               7-1032, gnl|Mm7|chr2 (91363471-91364501)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               jej (0.0989218)

	7-1032, gnl\|bosTau2\|chr15 (49424072-49425123)
	7-1032, gnl\|Hg17\|chr11 (46836109-46835111)
	7-1032, gnl\|Mm7\|chr2 (91363471-91364501)

	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	cje (0.165235)
	nco (0.161734)
	cst (0.140036)
	jej (0.0989218)