Non-Coding RNA Search

Ss1.1-Mixn-0026a15.5

Sequence:


               
               CCCTGGACACCTCTGTCACTATGTGGTTCCTGGTTCTGCGCCTTGCCCTGTCCCTGGCAG
GAACTGGAGCTGCGCCCCCCATCCAGTCTCGGATCATAGGAGGCAGGGAGTGTGAGAAAG
ATTCTCACCCCTGGCAGGTGGCTATCTACCATTACAGCTCCTTCCAGTGTGGGGGCGTCC
TGGTGGACCCCAAGTGGGTGCTCACAGCAGCTCACTGCAAGAACGATAATTATCAGGTCT
GGCTGGGTCGCCACAACCTGTTCGAGAACGAAGACACAGCCCAGTTTTTCGGGGTCACTG
CGGACTTCCCGCACCCCGGTTTCAACCTGAGCCTCCTGAAGAACCACACCAAGGCCGACG
GGAAGGACTACAGCCACGACCTCATGCTGCTCCGCCTGCAGAGCCCCGCCAAGATCACAG
ACGCTGTGAAGGTCCTGGAGCTGCCCACCCAGGAACCCGAACTGGGCAGCACCTGCCAAG
CCTCCGGCTGGGGCAGCATCGAGCCAGGACCAGACGACTTCGAATTCCCCGACGAAATCC
AGTGTGTGGAGCTCACTCTCCTGCAGAATACGTTTTGTGCCGATGCCCATCCTGACAAGG
TGACGGAGTCCATGCTGTGTGCTGGATACCTGCCAGGTGGCAAGGACACCTGTATGGGTG
ACTCAGGAGGCCCGCTGATCTGCAACGGTATGTGGCAAGGGATCACGTCCTGGGGCCACA
CTCCGTGTGGTAGCGCTAATAAGCCGTCCATCTACACCAAACTGATTTTCTATCTGGATT
GGATCAATGACACCATTACTGAAAACCCCTGAATGCCCCCGTCCTGTCCCATGCCCACAG
TAAAATCAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGGACACCTCTGTCACTATGTGGTTCCTGGTTCTGCGCCTTGCCCTGTCCCTGGCAG
GAACTGGAGCTGCGCCCCCCATCCAGTCTCGGATCATAGGAGGCAGGGAGTGTGAGAAAG
ATTCTCACCCCTGGCAGGTGGCTATCTACCATTACAGCTCCTTCCAGTGTGGGGGCGTCC
TGGTGGACCCCAAGTGGGTGCTCACAGCAGCTCACTGCAAGAACGATAATTATCAGGTCT
GGCTGGGTCGCCACAACCTGTTCGAGAACGAAGACACAGCCCAGTTTTTCGGGGTCACTG
CGGACTTCCCGCACCCCGGTTTCAACCTGAGCCTCCTGAAGAACCACACCAAGGCCGACG
GGAAGGACTACAGCCACGACCTCATGCTGCTCCGCCTGCAGAGCCCCGCCAAGATCACAG
ACGCTGTGAAGGTCCTGGAGCTGCCCACCCAGGAACCCGAACTGGGCAGCACCTGCCAAG
CCTCCGGCTGGGGCAGCATCGAGCCAGGACCAGACGACTTCGAATTCCCCGACGAAATCC
AGTGTGTGGAGCTCACTCTCCTGCAGAATACGTTTTGTGCCGATGCCCATCCTGACAAGG
TGACGGAGTCCATGCTGTGTGCTGGATACCTGCCAGGTGGCAAGGACACCTGTATGGGTG
ACTCAGGAGGCCCGCTGATCTGCAACGGTATGTGGCAAGGGATCACGTCCTGGGGCCACA
CTCCGTGTGGTAGCGCTAATAAGCCGTCCATCTACACCAAACTGATTTTCTATCTGGATT
GGATCAATGACACCATTACTGAAAACCCCTGAATGCCCCCGTCCTGTCCCATGCCCACAG
TAAAATCAAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50054435|ref|NP_001001911.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50054435|ref|NP_001001911.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               66-226, gnl|bosTau2|chr18 (52071316-52071156)
               

               
               66-226, gnl|Hg17|chr19 (56016940-56016780)
               

               
               66-226, gnl|Mm7|chr7 (40401356-40401516)
               


               
               228-507, gnl|bosTau2|chr18 (52069484-52069205)
               

               
               228-507, gnl|Hg17|chr19 (56015510-56015228)
               

               
               228-507, gnl|Mm7|chr7 (40402365-40402644)
               


               
               650-852, gnl|bosTau2|chr18 (52068364-52068163)
               

               
               650-852, gnl|Hg17|chr19 (56014424-56014223)
               

               
               650-852, gnl|Mm7|chr7 (40403248-40403442)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-226, gnl|bosTau2|chr18 (52071316-52071156)
               

               
               66-226, gnl|Hg17|chr19 (56016940-56016780)
               

               
               66-226, gnl|Mm7|chr7 (40401356-40401516)
               


               
               228-507, gnl|bosTau2|chr18 (52069484-52069205)
               

               
               228-507, gnl|Hg17|chr19 (56015510-56015228)
               

               
               228-507, gnl|Mm7|chr7 (40402365-40402644)
               


               
               650-852, gnl|bosTau2|chr18 (52068364-52068163)
               

               
               650-852, gnl|Hg17|chr19 (56014424-56014223)
               

               
               650-852, gnl|Mm7|chr7 (40403248-40403442)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ton (0.1755)
               

               
               cki (0.165235)
               

               
               lyg (0.133103)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               cki (0.165235)
               

               
               lyg (0.133103)

	66-226, gnl\|bosTau2\|chr18 (52071316-52071156)
	66-226, gnl\|Hg17\|chr19 (56016940-56016780)
	66-226, gnl\|Mm7\|chr7 (40401356-40401516)

	228-507, gnl\|bosTau2\|chr18 (52069484-52069205)
	228-507, gnl\|Hg17\|chr19 (56015510-56015228)
	228-507, gnl\|Mm7\|chr7 (40402365-40402644)

	650-852, gnl\|bosTau2\|chr18 (52068364-52068163)
	650-852, gnl\|Hg17\|chr19 (56014424-56014223)
	650-852, gnl\|Mm7\|chr7 (40403248-40403442)