Ss1.1-Mixn-0026b06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGNCCGTTGTCCCCCGGGATGTGAGGGCCGCAGCTCCGCCGGCGGGGCCTGGAGTGGA GCGGAGAGCGGACGCAGACGGTAACGCGCTGGGCGGGCGCGGGGAGGGCTCTGGCTGCCC CGGCCGTGTCCAGGCTTGGGCAGCAGGAGCGCGGGCAGCGCTTCGGGGTCAGAGGGCCGG AGATCCCGCATCGGGCAGTTGTCGTTGAGGTCCCAGAGCCGGCAGAGCCAGGGAGGGCCG CAGCCCAGGAGGGCCGGGAGGGGGCTGGGCCGGCCAGCAGGCGAGCGCCCGGAGACCCGG CGGCAGGTGCCGGGACCCCCTTGGGATCCAACTCTCTCTCCCCAGCTCCACCTACTTTGG CCTGAACCCAGCCTCCGAGGGCTAAAAATATTGCCCCGAGGCTCCTGAGCGGAATCAGAT CGTGCTAAGTAGGGCACAAGGCTGCAGAGGCGACCGAGCTCTTCGGCCCCGGGGCTGGAG GAAGACTCCTGAGCAGCGGCTCCCACCTACGCTCGGCGGCTAGCGGTCTCGCTCAGCCCA GCAGGCAAGTGCGGGGCCGCAGTGGTTCTCTGAAGTTGCCCCACACCGAGCAGCCGTGCC TAGCTTCTCGCTACCCATCAATCACTGCTGGCTTCTCAGGGGGTCCTGTAAATGCTTTAT AAGCAGTGGCCGAAAGTTACCCACTGAAGGAATTAGAACTATCAGGCAGAAGCCGTAGGG CTCTTCGTGTTAGAAACGTCAGCTCTGGCTTCTTTTTAAATTCATTCCATGTTTCTGAAT GAGAGAGGAGCTGTGCCAGGCACTGTTTCTGGTTTGTGTGGAGGCCAGTATGAAGCTGAA AAAGCAGGTGACAGTGTGTGGGGCTGCGATCTTCTGTGTGGCGGTCTTCTCACTCTACCT CATGCTGGACCGAGTGCAGCATGATCCCACCCGACACCAGAATGGTGGCAACTTCCCCCG GAGTCAAATTTCTGTGCTGCAGAACCGCATTGAACAGCTGGAGCAGCTGTTGGAGGAGAA CCATGAGATCATCAGTCACATCAAGGACTCCGTGCTGGAGCTGACTGCCAACGTGGAGGG CCCACCTGCCCTGCTGCCCTACTCTATGGCCAATGGCTCCTGGGTGGTGCCACCAGAGCC CCGGCCCAGCTTCTTCTCTGTCTCCCCTCAAGACTGCCAGTTTGCTCTGGGGAGCCGGGG CCAGAAGCCAGAGCTGCAGATGCTGGCTCTATCAGAGGAGTTACCATTTGACAACTTGGA CGGCGGCGTGTGGAAGCAAGGCTTTGACATCTCCTACAGCCCACACGACTGGGACACCGA AGACCTGCAGGTGTATGTGGTCCCCCACTCTCACAATGACCCAGGCTGGCTCAAGACCTT TGACAAGTACTACACAGAACAGACCCAGCACATCCTCAACAACATGCTATCCAAGCTGCA GGAGGACCCCCGGCGGCGATTCCTCTGGGCTGAAGTTTCCTTCTTCGCCAAGTGGTGGGA CACATCAATGCCCAAAAAAAGAGCCGCCGTCCGAAGGCTGGTGGGCAATGGGCAGCTGGA GATTGCGACAGGAGGCTGGGTGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGNCCGTTGTCCCCCGGGATGTGAGGGCCGCAGCTCCGCCGGCGGGGCCTGGAGTGGA GCGGAGAGCGGACGCAGACGGTAACGCGCTGGGCGGGCGCGGGGAGGGCTCTGGCTGCCC CGGCCGTGTCCAGGCTTGGGCAGCAGGAGCGCGGGCAGCGCTTCGGGGTCAGAGGGCCGG AGATCCCGCATCGGGCAGTTGTCGTTGAGGTCCCAGAGCCGGCAGAGCCAGGGAGGGCCG CAGCCCAGGAGGGCCGGGAGGGGGCTGGGCCGGCCAGCAGGCGAGCGCCCGGAGACCCGG CGGCAGGTGCCGGGACCCCCTTGGGATCCAACTCTCTCTCCCCAGCTCCACCTACTTTGG CCTGAACCCAGCCTCCGAGGGCTAAAAATATTGCCCCGAGGCTCCTGAGCGGAATCAGAT CGTGCTAAGTAGGGCACAAGGCTGCAGAGGCGACCGAGCTCTTCGGCCCCGGGGCTGGAG GAAGACTCCTGAGCAGCGGCTCCCACCTACGCTCGGCGGCTAGCGGTCTCGCTCAGCCCA GCAGGCAAGTGCGGGGCCGCAGTGGTTCTCTGAAGTTGCCCCACACCGAGCAGCCGTGCC TAGCTTCTCGCTACCCATCAATCACTGCTGGCTTCTCAGGGGGTCCTGTAAATGCTTTAT AAGCAGTGGCCGAAAGTTACCCACTGAAGGAATTAGAACTATCAGGCAGAAGCCGTAGGG CTCTTCGTGTTAGAAACGTCAGCTCTGGCTTCTTTTTAAATTCATTCCATGTTTCTGAAT GAGAGAGGAGCTGTGCCAGGCACTGTTTCTGGTTTGTGTGGAGGCCAGTATGAAGCTGAA AAAGCAGGTGACAGTGTGTGGGGCTGCGATCTTCTGTGTGGCGGTCTTCTCACTCTACCT CATGCTGGACCGAGTGCAGCATGATCCCACCCGACACCAGAATGGTGGCAACTTCCCCCG GAGTCAAATTTCTGTGCTGCAGAACCGCATTGAACAGCTGGAGCAGCTGTTGGAGGAGAA CCATGAGATCATCAGTCACATCAAGGACTCCGTGCTGGAGCTGACTGCCAACGTGGAGGG CCCACCTGCCCTGCTGCCCTACTCTATGGCCAATGGCTCCTGGGTGGTGCCACCAGAGCC CCGGCCCAGCTTCTTCTCTGTCTCCCCTCAAGACTGCCAGTTTGCTCTGGGGAGCCGGGG CCAGAAGCCAGAGCTGCAGATGCTGGCTCTATCAGAGGAGTTACCATTTGACAACTTGGA CGGCGGCGTGTGGAAGCAAGGCTTTGACATCTCCTACAGCCCACACGACTGGGACACCGA AGACCTGCAGGTGTATGTGGTCCCCCACTCTCACAATGACCCAGGCTGGCTCAAGACCTT TGACAAGTACTACACAGAACAGACCCAGCACATCCTCAACAACATGCTATCCAAGCTGCA GGAGGACCCCCGGCGGCGATTCCTCTGGGCTGAAGTTTCCTTCTTCGCCAAGTGGTGGGA CACATCAATGCCCAAAAAAAGAGCCGCCGTCCGAAGGCTGGTGGGCAATGGGCAGCTGGA GATTGCGACAGGAGGCTGGGTGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1440-1561, - strand, RNAz p=0.820183 | |
| 1441-1559, - strand, RNAz p=0.518248 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1440-1561, - strand, RNAz p=0.820183 | |
| 1441-1559, - strand, RNAz p=0.518248 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 961-1219, gnl|bosTau2|chr21 (12155256-12154998) | |
| 961-1219, gnl|canFam2|chr3 (56197279-56197000) | |
| 961-1219, gnl|danRer3|chr25 (6234949-6234678) | |
| 961-1219, gnl|dasNov1|scaffold_79641 (741-1019) | |
| 961-1219, gnl|echTel1|scaffold_239870 (3047-2764) | |
| 961-1219, gnl|fr1|chrUn (166103821-166104104) | |
| 961-1219, gnl|galGal2|chr10 (20656324-20656059) | |
| 961-1219, gnl|hg17|chr15 (89249475-89249754) | |
| 961-1219, gnl|Hg17|chr15 (89249484-89249742) | |
| 961-1219, gnl|loxAfr1|scaffold_13701 (8514-8793) | |
| 961-1219, gnl|mm7|chr17 (62834044-62834316) | |
| 961-1219, gnl|monDom2|scaffold_45 (9931247-9931526) | |
| 961-1219, gnl|oryCun1|scaffold_195830 (9647-9378) | |
| 961-1219, gnl|panTro1|chr16 (90201001-90201280) | |
| 961-1219, gnl|rn3|chr1 (136265076-136264797) | |
| 961-1219, gnl|tetNig1|chr13 (5062698-5062981) | |
| 961-1219, gnl|xenTro1|scaffold_358 (153776-153504) | |
| 1362-1561, gnl|bosTau2|chr21 (12152771-12152571) | |
| 1362-1561, gnl|canFam2|chr3 (56196679-56196499) | |
| 1362-1561, gnl|danRer3|chr25 (6224470-6224291) | |
| 1362-1561, gnl|dasNov1|scaffold_45812 (4978-4798) | |
| 1362-1561, gnl|echTel1|scaffold_239870 (2452-2272) | |
| 1362-1561, gnl|fr1|chrUn (166105040-166105220) | |
| 1362-1561, gnl|galGal2|chr10 (20655726-20655551) | |
| 1362-1561, gnl|hg17|chr15 (89250077-89250257) | |
| 1362-1561, gnl|Hg17|chr15 (89250076-89250278) | |
| 1362-1561, gnl|loxAfr1|scaffold_13701 (9114-9304) | |
| 1362-1561, gnl|mm7|chr7 (76237397-76237217) | |
| 1362-1561, gnl|Mm7|chr7 (76237396-76237194) | |
| 1362-1561, gnl|monDom2|scaffold_45 (9932504-9932684) | |
| 1362-1561, gnl|oryCun1|scaffold_213015 (34953-35132) | |
| 1362-1561, gnl|panTro1|chr16 (90201603-90201783) | |
| 1362-1561, gnl|rheMac2|chr6 (106041128-106041308) | |
| 1362-1561, gnl|rn3|chr1 (136264478-136264300) | |
| 1362-1561, gnl|tetNig1|chr13 (5063739-5063891) | |
| 1362-1561, gnl|xenTro1|scaffold_358 (151387-151212) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 961-1219, gnl|bosTau2|chr21 (12155256-12154998) | |
| 961-1219, gnl|canFam2|chr3 (56197279-56197000) | |
| 961-1219, gnl|danRer3|chr25 (6234949-6234678) | |
| 961-1219, gnl|dasNov1|scaffold_79641 (741-1019) | |
| 961-1219, gnl|echTel1|scaffold_239870 (3047-2764) | |
| 961-1219, gnl|fr1|chrUn (166103821-166104104) | |
| 961-1219, gnl|galGal2|chr10 (20656324-20656059) | |
| 961-1219, gnl|hg17|chr15 (89249475-89249754) | |
| 961-1219, gnl|Hg17|chr15 (89249484-89249742) | |
| 961-1219, gnl|loxAfr1|scaffold_13701 (8514-8793) | |
| 961-1219, gnl|mm7|chr17 (62834044-62834316) | |
| 961-1219, gnl|monDom2|scaffold_45 (9931247-9931526) | |
| 961-1219, gnl|oryCun1|scaffold_195830 (9647-9378) | |
| 961-1219, gnl|panTro1|chr16 (90201001-90201280) | |
| 961-1219, gnl|rn3|chr1 (136265076-136264797) | |
| 961-1219, gnl|tetNig1|chr13 (5062698-5062981) | |
| 961-1219, gnl|xenTro1|scaffold_358 (153776-153504) | |
| 1362-1561, gnl|bosTau2|chr21 (12152771-12152571) | |
| 1362-1561, gnl|canFam2|chr3 (56196679-56196499) | |
| 1362-1561, gnl|danRer3|chr25 (6224470-6224291) | |
| 1362-1561, gnl|dasNov1|scaffold_45812 (4978-4798) | |
| 1362-1561, gnl|echTel1|scaffold_239870 (2452-2272) | |
| 1362-1561, gnl|fr1|chrUn (166105040-166105220) | |
| 1362-1561, gnl|galGal2|chr10 (20655726-20655551) | |
| 1362-1561, gnl|hg17|chr15 (89250077-89250257) | |
| 1362-1561, gnl|Hg17|chr15 (89250076-89250278) | |
| 1362-1561, gnl|loxAfr1|scaffold_13701 (9114-9304) | |
| 1362-1561, gnl|mm7|chr7 (76237397-76237217) | |
| 1362-1561, gnl|Mm7|chr7 (76237396-76237194) | |
| 1362-1561, gnl|monDom2|scaffold_45 (9932504-9932684) | |
| 1362-1561, gnl|oryCun1|scaffold_213015 (34953-35132) | |
| 1362-1561, gnl|panTro1|chr16 (90201603-90201783) | |
| 1362-1561, gnl|rheMac2|chr6 (106041128-106041308) | |
| 1362-1561, gnl|rn3|chr1 (136264478-136264300) | |
| 1362-1561, gnl|tetNig1|chr13 (5063739-5063891) | |
| 1362-1561, gnl|xenTro1|scaffold_358 (151387-151212) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |