Non-Coding RNA Search

Ss1.1-Mixn-0026b07.5

Sequence:


               
               TTTTTTTGTAAAAATAACTAGGCTGTTTGTTGAGAAAGTGAGATCCCGGGCACGCGGGTC
AGACCGCTGCCCTGCGGGGAACACAGCTCCTGCCGCTCCGGGAAGGCGGCGCCTCCCACA
CGCAGGCTTATTTCAGCCCTTCCAGACTTCGGGGGTGGGGGGCTTTGTCCACTAGACCCT
CAAGAGAGGGGTGGGCTGGGTGCCCAGGGAGAGCCGGCAGGACGGGGAGCTCGTGGCACC
AGGGAGGGCCGTCATGGCGGTGCCCGATCTGCAGCGCCCAGCCCTGCCCCAGTGAAAGTC
GTGTTGTCTCCGAGGCGTGGGTTTCTAGGTCCTCAAGCCCCGCGGTGGGCCCTGGGCTCG
GGGCAGGGGGTGGCAGGCGGGGCCCCTGGCGCAGATGGCTTGTAACTTCGCGGCTTGGCT
TCACCACAGATCCGCCTTGGAACGACGCGTTCCCACCCCGCCACCTCCCCCGAAAAACAC
GATGGGGCGATGACCTGCTGCGCGGGCAGCTGGTGCCCAGCCGACGGCCCCGCCCACTGG
TCCTGTCTGTGAAATAAATACAAGCGTTGGCGCGCCCCGTCCGGCTCCCTGCGCCCCTGC
CGGCTGCCCCGGCTCAGACGCTGGTTTCCGGCGTGTGAACCACCTCCCCGTTCTGCTCGG
GCTCCGTCTTCAGGAAATGCTCCACCTCCCGGGAGTCCACCCTCACGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTGTAAAAATAACTAGGCTGTTTGTTGAGAAAGTGAGATCCCGGGCACGCGGGTC
AGACCGCTGCCCTGCGGGGAACACAGCTCCTGCCGCTCCGGGAAGGCGGCGCCTCCCACA
CGCAGGCTTATTTCAGCCCTTCCAGACTTCGGGGGTGGGGGGCTTTGTCCACTAGACCCT
CAAGAGAGGGGTGGGCTGGGTGCCCAGGGAGAGCCGGCAGGACGGGGAGCTCGTGGCACC
AGGGAGGGCCGTCATGGCGGTGCCCGATCTGCAGCGCCCAGCCCTGCCCCAGTGAAAGTC
GTGTTGTCTCCGAGGCGTGGGTTTCTAGGTCCTCAAGCCCCGCGGTGGGCCCTGGGCTCG
GGGCAGGGGGTGGCAGGCGGGGCCCCTGGCGCAGATGGCTTGTAACTTCGCGGCTTGGCT
TCACCACAGATCCGCCTTGGAACGACGCGTTCCCACCCCGCCACCTCCCCCGAAAAACAC
GATGGGGCGATGACCTGCTGCGCGGGCAGCTGGTGCCCAGCCGACGGCCCCGCCCACTGG
TCCTGTCTGTGAAATAAATACAAGCGTTGGCGCGCCCCGTCCGGCTCCCTGCGCCCCTGC
CGGCTGCCCCGGCTCAGACGCTGGTTTCCGGCGTGTGAACCACCTCCCCGTTCTGCTCGG
GCTCCGTCTTCAGGAAATGCTCCACCTCCCGGGAGTCCACCCTCACGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               589-704, - strand, RNAz p=0.719525

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               589-704, - strand, RNAz p=0.719525

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004207, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004207, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               122-706, gnl|bosTau2|chr19 (44438813-44438222)
               

               
               122-706, gnl|Hg17|chr17 (77790624-77790049)
               

               
               122-706, gnl|Mm7|chr11 (121067707-121067085)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-706, gnl|bosTau2|chr19 (44438813-44438222)
               

               
               122-706, gnl|Hg17|chr17 (77790624-77790049)
               

               
               122-706, gnl|Mm7|chr11 (121067707-121067085)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pla (0.267344)
               

               
               nbm (0.198649)
               

               
               ton (0.1755)
               

               
               nca (0.136874)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               nbm (0.198649)
               

               
               ton (0.1755)
               

               
               nca (0.136874)

	122-706, gnl\|bosTau2\|chr19 (44438813-44438222)
	122-706, gnl\|Hg17\|chr17 (77790624-77790049)
	122-706, gnl\|Mm7\|chr11 (121067707-121067085)