Non-Coding RNA Search

Ss1.1-Mixn-0026b20.5.5

Sequence:


               
               GACAGAGAGGTGGCAGCCTGGTCTGTCTCCTCCAGCATCTCCACCAGCATCGGCTGAGCT
ATGAGCCAAACCCTGGATTTACAGGGAGGAAAAGCCTTCGGGCTGCTGAAGGCCCAGCAG
GAAGAGAGACTCAATGAAATCAACAAGCAATTCCTGGATGATCCCAAATATAGCAGTGAT
GAGGACCTGTCCTCCAAACTGGAAGCCTTCAAACAGAAATACATGGAGTTTGACCTGAAT
GGAAATGGTGATATTGATATTATGTCCCTGAAACGAATGCTGGAGAAGCTTGGGGTCCCC
AAGACCCACCTGGAGCTAAAGAAATTAATCAAGGAGGTATCCAGTGGCTCTGGGGAGACT
TTCAGCTACTCTGACTTTCTCAAGATGATGTTGGGCAAGAGATCTGCCATCCTAAAAATG
ATCCTGATGTACGAAGAGAAAGCGAGAGAACAGGAAAAGCCAACGGGTCCTCCGGCCAAG
AAGGCTATCTCTGAGTTGCCCTGATTTGTGGTGGGGGAGTTGTGGTGGAATTGAAGGGGC
TTCTAATGACCCCAACATGGAAAAAGAAGGCCAACTTGTGAGCCAGAGCCAATCTAATTT
AAATAAATCATCTTCCGTCGTATCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGAGAGGTGGCAGCCTGGTCTGTCTCCTCCAGCATCTCCACCAGCATCGGCTGAGCT
ATGAGCCAAACCCTGGATTTACAGGGAGGAAAAGCCTTCGGGCTGCTGAAGGCCCAGCAG
GAAGAGAGACTCAATGAAATCAACAAGCAATTCCTGGATGATCCCAAATATAGCAGTGAT
GAGGACCTGTCCTCCAAACTGGAAGCCTTCAAACAGAAATACATGGAGTTTGACCTGAAT
GGAAATGGTGATATTGATATTATGTCCCTGAAACGAATGCTGGAGAAGCTTGGGGTCCCC
AAGACCCACCTGGAGCTAAAGAAATTAATCAAGGAGGTATCCAGTGGCTCTGGGGAGACT
TTCAGCTACTCTGACTTTCTCAAGATGATGTTGGGCAAGAGATCTGCCATCCTAAAAATG
ATCCTGATGTACGAAGAGAAAGCGAGAGAACAGGAAAAGCCAACGGGTCCTCCGGCCAAG
AAGGCTATCTCTGAGTTGCCCTGATTTGTGGTGGGGGAGTTGTGGTGGAATTGAAGGGGC
TTCTAATGACCCCAACATGGAAAAAGAAGGCCAACTTGTGAGCCAGAGCCAATCTAATTT
AAATAAATCATCTTCCGTCGTATCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11611960|gb|AAG39109.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11611960|gb|AAG39109.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               256-374, - strand, RNAz p=0.864886

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-374, - strand, RNAz p=0.864886

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               256-416, gnl|bosTau2|chr11 (81727166-81727326)
               

               
               256-416, gnl|canFam2|chr9 (56295947-56295804)
               

               
               256-416, gnl|danRer3|chr5 (31983857-31983716)
               

               
               256-416, gnl|dasNov1|scaffold_91846 (2020-1890)
               

               
               256-416, gnl|echTel1|scaffold_277172 (389-532)
               

               
               256-416, gnl|fr1|chrUn (261809242-261809374)
               

               
               256-416, gnl|galGal2|chr17 (4269771-4269638)
               

               
               256-416, gnl|hg17|chr9 (131022684-131022827)
               

               
               256-416, gnl|Hg17|chr9 (131022696-131022856)
               

               
               256-416, gnl|loxAfr1|scaffold_216007 (595-738)
               

               
               256-416, gnl|mm7|chr2 (31976928-31977071)
               

               
               256-416, gnl|Mm7|chr2 (31976940-31977100)
               

               
               256-416, gnl|monDom2|scaffold_51 (6613862-6614005)
               

               
               256-416, gnl|oryCun1|scaffold_140311 (2813-2670)
               

               
               256-416, gnl|panTro1|chr11 (115899737-115899880)
               

               
               256-416, gnl|rheMac2|chr15 (7634807-7634664)
               

               
               256-416, gnl|rn3|chr3 (10969158-10969301)
               

               
               256-416, gnl|tetNig1|chr4 (2931263-2931406)
               

               
               256-416, gnl|xenTro1|scaffold_191 (361580-361720)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               256-416, gnl|bosTau2|chr11 (81727166-81727326)
               

               
               256-416, gnl|canFam2|chr9 (56295947-56295804)
               

               
               256-416, gnl|danRer3|chr5 (31983857-31983716)
               

               
               256-416, gnl|dasNov1|scaffold_91846 (2020-1890)
               

               
               256-416, gnl|echTel1|scaffold_277172 (389-532)
               

               
               256-416, gnl|fr1|chrUn (261809242-261809374)
               

               
               256-416, gnl|galGal2|chr17 (4269771-4269638)
               

               
               256-416, gnl|hg17|chr9 (131022684-131022827)
               

               
               256-416, gnl|Hg17|chr9 (131022696-131022856)
               

               
               256-416, gnl|loxAfr1|scaffold_216007 (595-738)
               

               
               256-416, gnl|mm7|chr2 (31976928-31977071)
               

               
               256-416, gnl|Mm7|chr2 (31976940-31977100)
               

               
               256-416, gnl|monDom2|scaffold_51 (6613862-6614005)
               

               
               256-416, gnl|oryCun1|scaffold_140311 (2813-2670)
               

               
               256-416, gnl|panTro1|chr11 (115899737-115899880)
               

               
               256-416, gnl|rheMac2|chr15 (7634807-7634664)
               

               
               256-416, gnl|rn3|chr3 (10969158-10969301)
               

               
               256-416, gnl|tetNig1|chr4 (2931263-2931406)
               

               
               256-416, gnl|xenTro1|scaffold_191 (361580-361720)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               spl (0.429553)
               

               
               ill (0.351185)
               

               
               csp (0.322373)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               nbm (0.198649)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)
               

               
               ill (0.351185)
               

               
               csp (0.322373)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               nbm (0.198649)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

	256-416, gnl\|bosTau2\|chr11 (81727166-81727326)
	256-416, gnl\|canFam2\|chr9 (56295947-56295804)
	256-416, gnl\|danRer3\|chr5 (31983857-31983716)
	256-416, gnl\|dasNov1\|scaffold_91846 (2020-1890)
	256-416, gnl\|echTel1\|scaffold_277172 (389-532)
	256-416, gnl\|fr1\|chrUn (261809242-261809374)
	256-416, gnl\|galGal2\|chr17 (4269771-4269638)
	256-416, gnl\|hg17\|chr9 (131022684-131022827)
	256-416, gnl\|Hg17\|chr9 (131022696-131022856)
	256-416, gnl\|loxAfr1\|scaffold_216007 (595-738)
	256-416, gnl\|mm7\|chr2 (31976928-31977071)
	256-416, gnl\|Mm7\|chr2 (31976940-31977100)
	256-416, gnl\|monDom2\|scaffold_51 (6613862-6614005)
	256-416, gnl\|oryCun1\|scaffold_140311 (2813-2670)
	256-416, gnl\|panTro1\|chr11 (115899737-115899880)
	256-416, gnl\|rheMac2\|chr15 (7634807-7634664)
	256-416, gnl\|rn3\|chr3 (10969158-10969301)
	256-416, gnl\|tetNig1\|chr4 (2931263-2931406)
	256-416, gnl\|xenTro1\|scaffold_191 (361580-361720)

	spl (0.429553)
	ill (0.351185)
	csp (0.322373)
	hyp (0.285673)
	ute (0.265569)
	nbm (0.198649)
	cmu (0.186393)
	sto (0.179824)
	cje (0.165235)
	cki (0.165235)
	nco (0.161734)
	fat (0.147427)
	ski (0.146735)
	lnt (0.142308)
	csk (0.140746)
	cst (0.140036)
	pgl (0.118483)
	jca (0.11396)