Non-Coding RNA Search

Ss1.1-Mixn-0026b24.5

Sequence:


               
               AAACTTTTCAAATCTTCAAAACATTGTAGTTCAAAGTATGACTTAAATTGCACCTAAAAT
ATTTTTTGCCAGTGCTTGTTAGAAATTCCTGTTTCACGGTAATACCTAAAGATATCTGAT
GCTGCACCATCAGATTGAAACACCAGCGCTTAGATGGTTTGAGACTCGTGTCGCCTGCAG
CTTCATCTGCTGTGACATCTTACTCTTCCCCAGTTTGAAGACAAAAGGAAAGCTCCAGTT
GTCTTTAGCGCCTGCCAGTTTTCCTCTAGTCAGTGCCATCCTTCCTCTACATGCACCGTT
ACCGTATATAGTACTTTCCTCACAGGAGGTGTCGCTGTAAAATATTTGCTTCGGGAAGTA
GCGGCAAGCACTTAGTATAAACAGCGATCTTTCTAGTCTGAACGACAGTACGTCACCGCA
CTGTGGCAAGGCTGGGCCTCGGGACCATGCCCGTTGGCTCTCACTGGAGTGTGCCCTACG
AGCGCCCCTCCTCTTCCTCCCACAGTCGGCCAACCAGTGACTCCGAGTGTGGTCACTCTA
AATGTTAAGAGGAAAAAATGTCTGGAGAAAAGGACATTCCCCGCTAAATTTCAGTACTTG
GCGTGAACCTGACAGGGCAGAAGTGCAGTCGACAGTTGTGTCAAAGTGAATCTTGTCATC
CACCTCTCACTTTTTCCTTGAGTGAGGAAACACACTGGTCTCGCAAGGACAGTGTTTGTG
CCTTGAGGATAGCAGTTAGAGTCTAGAGCCGTCTAAGCTATGGCGTTTTGCATTTTGTCG
TTCCAAGGGGGGAATACCATCCAAGAAAGTGAGGTGAAGACTGACGGCTTCGGTAATCAA
GAACATGTGTGTTTTGAGATGGATGTGTGATCAGGTCTGCTTTGGGGGGTTATTTAGGAC
ATCCTGAGTTCTCGATTGTTGGCCAACTTCCAGGCAAGTAGAAATCAGTGAAGCCTGTAA
ACTTTTCTAAGTTTATCGCAAAAAAAATGCTGTGTTCCTTCTGTGGCATGTGCTTCGCTG
CTGAAGGCTAAATCCTCAAAAGAAATAAAACGAAGGAGGGGACTAAGAATTCGTTAAAGT
AAATCAGTGGTGTTGCTACTAATTCCTGTCCTCAAGAATTGTGGGTACTGGATAAGTGAC
ATCTCCTGCACAGACGAACTCAACCTGGTAGATGAAAGCTTGCTTTGGTCACAGTTGCCT
ACGAATATGGGTTTCCAAACAAACATAAAGCCTTAACTTAGAATTTCATTATGTTTTAGA
ATCATCACTGCCTTAATGTTCAAACATCTATTTAAGTTCTCCTGCTAAAGGAGAAATGCA
TGTTTGTTGATGGCTTTTTGTAAATAGATACGCAGCGATCTATGGCTTTAAATTTCTTGT
GTGTTTCTGTGACATTGTTTGTTAATCCAGCCTATTGAGTTATTTACAGAAAAATGGAGC
ATGTAATATTCATGTACAAGTAAGAACTGTCTCCCCAAACCTTAGTTACCTGAATTGTTC
TAAGATTATTTGTAAAAGCTGAAACTCAGTGATTAAAAAGTGAGAATTCTAAAAAAAAAA
GCGAATTCTTCAACATACTCATAATGTGACTTTGTTGCCTTAACGTTTCATAAACTGATC
ATGTTCTGAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTTTTCAAATCTTCAAAACATTGTAGTTCAAAGTATGACTTAAATTGCACCTAAAAT
ATTTTTTGCCAGTGCTTGTTAGAAATTCCTGTTTCACGGTAATACCTAAAGATATCTGAT
GCTGCACCATCAGATTGAAACACCAGCGCTTAGATGGTTTGAGACTCGTGTCGCCTGCAG
CTTCATCTGCTGTGACATCTTACTCTTCCCCAGTTTGAAGACAAAAGGAAAGCTCCAGTT
GTCTTTAGCGCCTGCCAGTTTTCCTCTAGTCAGTGCCATCCTTCCTCTACATGCACCGTT
ACCGTATATAGTACTTTCCTCACAGGAGGTGTCGCTGTAAAATATTTGCTTCGGGAAGTA
GCGGCAAGCACTTAGTATAAACAGCGATCTTTCTAGTCTGAACGACAGTACGTCACCGCA
CTGTGGCAAGGCTGGGCCTCGGGACCATGCCCGTTGGCTCTCACTGGAGTGTGCCCTACG
AGCGCCCCTCCTCTTCCTCCCACAGTCGGCCAACCAGTGACTCCGAGTGTGGTCACTCTA
AATGTTAAGAGGAAAAAATGTCTGGAGAAAAGGACATTCCCCGCTAAATTTCAGTACTTG
GCGTGAACCTGACAGGGCAGAAGTGCAGTCGACAGTTGTGTCAAAGTGAATCTTGTCATC
CACCTCTCACTTTTTCCTTGAGTGAGGAAACACACTGGTCTCGCAAGGACAGTGTTTGTG
CCTTGAGGATAGCAGTTAGAGTCTAGAGCCGTCTAAGCTATGGCGTTTTGCATTTTGTCG
TTCCAAGGGGGGAATACCATCCAAGAAAGTGAGGTGAAGACTGACGGCTTCGGTAATCAA
GAACATGTGTGTTTTGAGATGGATGTGTGATCAGGTCTGCTTTGGGGGGTTATTTAGGAC
ATCCTGAGTTCTCGATTGTTGGCCAACTTCCAGGCAAGTAGAAATCAGTGAAGCCTGTAA
ACTTTTCTAAGTTTATCGCAAAAAAAATGCTGTGTTCCTTCTGTGGCATGTGCTTCGCTG
CTGAAGGCTAAATCCTCAAAAGAAATAAAACGAAGGAGGGGACTAAGAATTCGTTAAAGT
AAATCAGTGGTGTTGCTACTAATTCCTGTCCTCAAGAATTGTGGGTACTGGATAAGTGAC
ATCTCCTGCACAGACGAACTCAACCTGGTAGATGAAAGCTTGCTTTGGTCACAGTTGCCT
ACGAATATGGGTTTCCAAACAAACATAAAGCCTTAACTTAGAATTTCATTATGTTTTAGA
ATCATCACTGCCTTAATGTTCAAACATCTATTTAAGTTCTCCTGCTAAAGGAGAAATGCA
TGTTTGTTGATGGCTTTTTGTAAATAGATACGCAGCGATCTATGGCTTTAAATTTCTTGT
GTGTTTCTGTGACATTGTTTGTTAATCCAGCCTATTGAGTTATTTACAGAAAAATGGAGC
ATGTAATATTCATGTACAAGTAAGAACTGTCTCCCCAAACCTTAGTTACCTGAATTGTTC
TAAGATTATTTGTAAAAGCTGAAACTCAGTGATTAAAAAGTGAGAATTCTAAAAAAAAAA
GCGAATTCTTCAACATACTCATAATGTGACTTTGTTGCCTTAACGTTTCATAAACTGATC
ATGTTCTGAAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               612-726, - strand, RNAz p=0.999962
               

               
               834-944, + strand, RNAz p=0.968706

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               612-726, - strand, RNAz p=0.999962
               

               
               834-944, + strand, RNAz p=0.968706

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015251, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015251, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               178-492, gnl|bosTau2|chr18 (7642996-7642667)
               

               
               178-492, gnl|Hg17|chr16 (79636566-79637227)
               

               
               178-492, gnl|Mm7|chr8 (115570259-115570563)
               


               
               510-1632, gnl|bosTau2|chr18 (7642616-7641464)
               

               
               510-1632, gnl|Hg17|chr16 (79637282-79638425)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-492, gnl|bosTau2|chr18 (7642996-7642667)
               

               
               178-492, gnl|Hg17|chr16 (79636566-79637227)
               

               
               178-492, gnl|Mm7|chr8 (115570259-115570563)
               


               
               510-1632, gnl|bosTau2|chr18 (7642616-7641464)
               

               
               510-1632, gnl|Hg17|chr16 (79637282-79638425)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               amn (0.417711)
               

               
               mgm (0.360685)
               

               
               mga (0.32041)
               

               
               thg (0.253582)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               mgm (0.360685)
               

               
               mga (0.32041)
               

               
               thg (0.253582)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	612-726, - strand, RNAz p=0.999962
	834-944, + strand, RNAz p=0.968706

	178-492, gnl\|bosTau2\|chr18 (7642996-7642667)
	178-492, gnl\|Hg17\|chr16 (79636566-79637227)
	178-492, gnl\|Mm7\|chr8 (115570259-115570563)

	510-1632, gnl\|bosTau2\|chr18 (7642616-7641464)
	510-1632, gnl\|Hg17\|chr16 (79637282-79638425)

	amn (0.417711)
	mgm (0.360685)
	mga (0.32041)
	thg (0.253582)
	mas (0.210305)
	tes (0.207814)
	cmu (0.186393)
	rec (0.17307)
	eye (0.170503)
	fco (0.157208)
	liv (0.146284)
	spl (0.143184)
	hlv (0.139256)
	ssp (0.13552)
	ste (0.135208)
	nmm (0.132802)
	tra (0.123092)
	spc (0.113366)
	cty (0.10408)
	ldo (0.0970026)