Non-Coding RNA Search

Ss1.1-Mixn-0026d02.5

Sequence:


               
               GGAGAAGTCGGGACGATGCGGCTGTCGGTGGCCGCCGCCATCTCCCACGGCCGCGTCTTC
CGCCGCCTGGGCCTTGGTCCCGAGTCCCGCATCCACCTGTTGCAGAACTTGCTTACGGGA
CTGGTGCGACACGAACGCATCGAGGCGTCATGGGCACGCGTGGACGAGCTGAGGGGCTAC
GCGGAGAAGCTCATCGACTATGGGAAGCTGGGAGACACCAACGAACGAGCCATGCGCATG
GCTGACTTCTGGCTCACGGAGAAAGACTTGATCCCAAAGCTGTTTCAAGTACTGGCCCCT
CGGTTCCAAGGTCAGAATGGGGGCTACACGAGAATGCTGCAGATCCCAAATCGGAATGAG
CAGGATCGGGCCAAGATGGCAGTGATCGAGTATAAAGGGAACTGTCTGCCACCTTTGCCC
CTGCCTCGCAGGGACAGCAACCTTACACTCCTAAACCAACTACTCCAGGGACTGCGGCAG
GACCAGGAAGCAAGCAGCCACACAGCTCAAACACCAGCAGTTTAACTGGAGCCAAGAGTG
TGCAGCCCTCATCAGTGCCCAGGATCCCAGGGCTTGGGAGCCCTTTTAATCGCTAAGAAC
TGGAGCTAGCCTTGTAAAACAGACCATCTTATTGGAGCCCAGAACCTTCTGGGAGCCAGA
TAATCTTTGCAAAATAGATCAAGTTCCTTGTATGAGTATATGTAAACTGATTTTTTTCTC
CCCTCGGGATTTCTGGAGAACCAGAACACGCTCGGTCTCTGTGAGACAGTAAATTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAGTCGGGACGATGCGGCTGTCGGTGGCCGCCGCCATCTCCCACGGCCGCGTCTTC
CGCCGCCTGGGCCTTGGTCCCGAGTCCCGCATCCACCTGTTGCAGAACTTGCTTACGGGA
CTGGTGCGACACGAACGCATCGAGGCGTCATGGGCACGCGTGGACGAGCTGAGGGGCTAC
GCGGAGAAGCTCATCGACTATGGGAAGCTGGGAGACACCAACGAACGAGCCATGCGCATG
GCTGACTTCTGGCTCACGGAGAAAGACTTGATCCCAAAGCTGTTTCAAGTACTGGCCCCT
CGGTTCCAAGGTCAGAATGGGGGCTACACGAGAATGCTGCAGATCCCAAATCGGAATGAG
CAGGATCGGGCCAAGATGGCAGTGATCGAGTATAAAGGGAACTGTCTGCCACCTTTGCCC
CTGCCTCGCAGGGACAGCAACCTTACACTCCTAAACCAACTACTCCAGGGACTGCGGCAG
GACCAGGAAGCAAGCAGCCACACAGCTCAAACACCAGCAGTTTAACTGGAGCCAAGAGTG
TGCAGCCCTCATCAGTGCCCAGGATCCCAGGGCTTGGGAGCCCTTTTAATCGCTAAGAAC
TGGAGCTAGCCTTGTAAAACAGACCATCTTATTGGAGCCCAGAACCTTCTGGGAGCCAGA
TAATCTTTGCAAAATAGATCAAGTTCCTTGTATGAGTATATGTAAACTGATTTTTTTCTC
CCCTCGGGATTTCTGGAGAACCAGAACACGCTCGGTCTCTGTGAGACAGTAAATTCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874132|ref|XP_583525.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874132|ref|XP_583525.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               333-452, - strand, RNAz p=0.806191

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               333-452, - strand, RNAz p=0.806191

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-189, gnl|bosTau2|chr15 (28976519-28976331)
               

               
               1-189, gnl|Hg17|chr11 (6661118-6660930)
               

               
               1-189, gnl|Mm7|chr7 (101867417-101867229)
               


               
               253-747, gnl|bosTau2|chr15 (28975624-28975111)
               

               
               253-747, gnl|Hg17|chr11 (6660215-6659667)
               

               
               253-747, gnl|Mm7|chr7 (101866571-101866034)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-189, gnl|bosTau2|chr15 (28976519-28976331)
               

               
               1-189, gnl|Hg17|chr11 (6661118-6660930)
               

               
               1-189, gnl|Mm7|chr7 (101867417-101867229)
               


               
               253-747, gnl|bosTau2|chr15 (28975624-28975111)
               

               
               253-747, gnl|Hg17|chr11 (6660215-6659667)
               

               
               253-747, gnl|Mm7|chr7 (101866571-101866034)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               mas (0.630915)
               

               
               eep (0.490256)
               

               
               duo (0.345602)
               

               
               sme (0.305437)
               

               
               nbm (0.297974)
               

               
               eje (0.296501)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.630915)
               

               
               eep (0.490256)
               

               
               duo (0.345602)
               

               
               sme (0.305437)
               

               
               nbm (0.297974)
               

               
               eje (0.296501)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

	1-189, gnl\|bosTau2\|chr15 (28976519-28976331)
	1-189, gnl\|Hg17\|chr11 (6661118-6660930)
	1-189, gnl\|Mm7\|chr7 (101867417-101867229)

	253-747, gnl\|bosTau2\|chr15 (28975624-28975111)
	253-747, gnl\|Hg17\|chr11 (6660215-6659667)
	253-747, gnl\|Mm7\|chr7 (101866571-101866034)

	mas (0.630915)
	eep (0.490256)
	duo (0.345602)
	sme (0.305437)
	nbm (0.297974)
	eje (0.296501)
	hlv (0.278513)
	che (0.272628)
	cly (0.241284)
	med (0.232504)
	nlu (0.191681)
	nco (0.161734)
	csp (0.161186)
	hyp (0.142837)
	nca (0.136874)
	ssp (0.13552)
	pla (0.133672)
	ova (0.129132)
	ese (0.126502)
	jej (0.0989218)