Ss1.1-Mixn-0026e08.5
|
GAAAACTATGGCGTGGGTACCTGCAGAGGCTGCGGTGGAAGAGTTGATGCCCCAGCTGTT
GCCAGTGGAGCCCTGCGACTTGACAGAAGGTTTCGATCCCAGCGTACCTCCGAGGACTCC
TCAGGAATACCTGAGGCGGGTCCAGATCGAAGCAGCTCAATGTCCAGATGTTGTGGTAGC
TCAAATTGACCCAAAGAAGTTGAAAAGGAAGCAAAGTGTAAATGTTTCTCTTTCAGGATG
CCAACCTGCGCCTGAAGGATATTCCCCTACACTTCAGTGGCAACAACAACAGGTGGCACA
GTTTTCAACTGTTCGGCAGAGTGTGAATAGACATAGAAGTCATTGGAAATCACAACAGTT
GGATAGTAACGTGACCATGCCAAAATCTGAAGATGAAGAAGGCTGGAAAAAATTTTGTCT
CGGTGAAAGGTTATGTGCTGAAGGAGTTACTGTTGGACCAGCTGCAAGTGAAAGTCCTGG
AATTGATTATGTACAAATTGGTTTTCCTCCCTTGCTTAGCATTGTTAGCAGAATGAATCA
GGCAACAGTAACTAGTGTCTTGGAGTATCTGAGTAATTGGTTTGGAGAAAGAGACTTTAC
TCCAGAATTGGGAAGATGGCTTTATGCTTTATTGGCTTGTCTTGAAAAGCCTTTATTACC
AGAGGCTCATTCACTGATTCGTCAGCTTGCAAGAAGGTGCTCTGAAGTGAGGCTTTTAGT
GGACAGCAAAGATGATGAGAGGGTTCCTGCTTTGAATTTATTAATCTGCTTGGTTAGCAG
GTATTTTGATCAACGTGACTTAGCTGATGAGCCATCTTGATGTAGCTGCGCTCTTGAAGA
TAGAAGATACTTGGGATGAAGACAACCTAAGTCTGAGGAAGTGCAGTGCCAATTCAAGTG
CAGGTTGCATCACATCGTCAACACTATGTGAAGCCTTCATCTTAACCTGTGCAGCTCAAG
TTGATATTCAGAAGATAGACTGTATTGATTTGAATGTCTGAGGTATCTTTGAAAGACCTT
GCCCAGTTAGGTTGTGATAATATTTGTAAAACTACAAATATAACAAAATTTATTGAAGTA
TTTTTAAAAATCCTTAAAAAAAAAGGACCTTACCCAGTTTTTGATGAACAGTTTAAACAG
GTTTCTGTAATCACATACTTCTAAAACTAAATTGAATGCCATTTATTGATGAAGCATCCT
GCACAAAAACTGTATGATGAAATTTTATAGAGTGCTGTTTCATTATTTACATATATACAT
ATAAAATGTTAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAAACTATGGCGTGGGTACCTGCAGAGGCTGCGGTGGAAGAGTTGATGCCCCAGCTGTT
GCCAGTGGAGCCCTGCGACTTGACAGAAGGTTTCGATCCCAGCGTACCTCCGAGGACTCC
TCAGGAATACCTGAGGCGGGTCCAGATCGAAGCAGCTCAATGTCCAGATGTTGTGGTAGC
TCAAATTGACCCAAAGAAGTTGAAAAGGAAGCAAAGTGTAAATGTTTCTCTTTCAGGATG
CCAACCTGCGCCTGAAGGATATTCCCCTACACTTCAGTGGCAACAACAACAGGTGGCACA
GTTTTCAACTGTTCGGCAGAGTGTGAATAGACATAGAAGTCATTGGAAATCACAACAGTT
GGATAGTAACGTGACCATGCCAAAATCTGAAGATGAAGAAGGCTGGAAAAAATTTTGTCT
CGGTGAAAGGTTATGTGCTGAAGGAGTTACTGTTGGACCAGCTGCAAGTGAAAGTCCTGG
AATTGATTATGTACAAATTGGTTTTCCTCCCTTGCTTAGCATTGTTAGCAGAATGAATCA
GGCAACAGTAACTAGTGTCTTGGAGTATCTGAGTAATTGGTTTGGAGAAAGAGACTTTAC
TCCAGAATTGGGAAGATGGCTTTATGCTTTATTGGCTTGTCTTGAAAAGCCTTTATTACC
AGAGGCTCATTCACTGATTCGTCAGCTTGCAAGAAGGTGCTCTGAAGTGAGGCTTTTAGT
GGACAGCAAAGATGATGAGAGGGTTCCTGCTTTGAATTTATTAATCTGCTTGGTTAGCAG
GTATTTTGATCAACGTGACTTAGCTGATGAGCCATCTTGATGTAGCTGCGCTCTTGAAGA
TAGAAGATACTTGGGATGAAGACAACCTAAGTCTGAGGAAGTGCAGTGCCAATTCAAGTG
CAGGTTGCATCACATCGTCAACACTATGTGAAGCCTTCATCTTAACCTGTGCAGCTCAAG
TTGATATTCAGAAGATAGACTGTATTGATTTGAATGTCTGAGGTATCTTTGAAAGACCTT
GCCCAGTTAGGTTGTGATAATATTTGTAAAACTACAAATATAACAAAATTTATTGAAGTA
TTTTTAAAAATCCTTAAAAAAAAAGGACCTTACCCAGTTTTTGATGAACAGTTTAAACAG
GTTTCTGTAATCACATACTTCTAAAACTAAATTGAATGCCATTTATTGATGAAGCATCCT
GCACAAAAACTGTATGATGAAATTTTATAGAGTGCTGTTTCATTATTTACATATATACAT
ATAAAATGTTAA
|
|
gi|55640643|ref|XP_509917.1| |
Protein identifier
|
gi|55640643|ref|XP_509917.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-145, gnl|bosTau2|chr21 (32289008-32288864) |
|
1-145, gnl|Hg17|chr14 (38653287-38653431) |
|
1-145, gnl|Mm7|chr12 (56948551-56948695) |
| |
|
379-496, gnl|bosTau2|chr21 (32281723-32281609) |
|
379-496, gnl|Hg17|chr14 (38661384-38661498) |
|
379-496, gnl|Mm7|chr12 (56953092-56953206) |
| |
|
596-722, gnl|bosTau2|chr21 (32277300-32277174) |
|
596-722, gnl|Hg17|chr14 (38670897-38671024) |
|
596-722, gnl|Mm7|chr12 (56960069-56960195) |
| |
|
778-1028, gnl|bosTau2|chr21 (33619959-33619707) |
|
778-1028, gnl|Hg17|chr14 (38675392-38675638) |
|
778-1028, gnl|Mm7|chr12 (56962815-56963062) |
| |
|
1103-1271, gnl|bosTau2|chr21 (33619723-33619550) |
|
1103-1271, gnl|Mm7|chr12 (56963046-56963403) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-145, gnl|bosTau2|chr21 (32289008-32288864) |
|
1-145, gnl|Hg17|chr14 (38653287-38653431) |
|
1-145, gnl|Mm7|chr12 (56948551-56948695) |
| |
|
379-496, gnl|bosTau2|chr21 (32281723-32281609) |
|
379-496, gnl|Hg17|chr14 (38661384-38661498) |
|
379-496, gnl|Mm7|chr12 (56953092-56953206) |
| |
|
596-722, gnl|bosTau2|chr21 (32277300-32277174) |
|
596-722, gnl|Hg17|chr14 (38670897-38671024) |
|
596-722, gnl|Mm7|chr12 (56960069-56960195) |
| |
|
778-1028, gnl|bosTau2|chr21 (33619959-33619707) |
|
778-1028, gnl|Hg17|chr14 (38675392-38675638) |
|
778-1028, gnl|Mm7|chr12 (56962815-56963062) |
| |
|
1103-1271, gnl|bosTau2|chr21 (33619723-33619550) |
|
1103-1271, gnl|Mm7|chr12 (56963046-56963403) |
|
tbr (0.308356) |
|
ldo (0.291008) |
|
kid (0.259471) |
|
ova (0.258264) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
sag (0.182715) |
|
gul (0.177588) |
|
fty (0.17584) |
|
duo (0.172801) |
|
cje (0.165235) |
|
fco (0.157208) |
|
liv (0.146284) |
|
lin (0.145603) |
|
spl (0.143184) |
|
pty (0.142714) |
|
nca (0.136874) |
|
pla (0.133672) |
|
sug (0.127291) |
|
thg (0.126791) |
|
tbr (0.308356) |
|
ldo (0.291008) |
|
kid (0.259471) |
|
ova (0.258264) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
sag (0.182715) |
|
gul (0.177588) |
|
fty (0.17584) |
|
duo (0.172801) |
|
cje (0.165235) |
|
fco (0.157208) |
|
liv (0.146284) |
|
lin (0.145603) |
|
spl (0.143184) |
|
pty (0.142714) |
|
nca (0.136874) |
|
pla (0.133672) |
|
sug (0.127291) |
|
thg (0.126791) |
