Ss1.1-Mixn-0026f11.5
|
CGCATGGGTGCTCCCCTGAAACCCCTGATGTTTGAGAAGGACGATGACAGCAACTTCCAT
GTGGATTTTGTGGTCGCAGCAGCTAGCCTGCGAGCTCAGAACTATGGGATCCCACCAGCC
AACCGTGCCAAGAGCAAACAAATTGTGGGCCGGATTATCCCAGCCATTGCCACCACTACA
GCAGCTGTGGCTGGCCTGGTGTGCCTGGAGCTGTATAAGGTGGTGGGAGGGCCTCGGCCC
CTCACTGCCTTTCGCCACAGCTATCTGCACCTGGCTGAAAACTACTTTAGCCGCTGGGTA
CCTAGTGCCCCAGCCATCCAGAAGTTCCATGACCTGAAGTGGACCTGTTGGGACCGCCTG
GAAGTGCCTGCTGGGCAGCCCATGAGGACCTTGGAGTCATTGTTGGCCCATCTCCAGGAA
CTACATGAGCTGAGGGTGAGGATGCTGCTGCACGGGCCAGCCCTGCTCTACTCGGCAGGA
TGGTCGCCTGAAAAGCGGGCCCATCATCTCTCCCTCAGGGTGACAGATCTGGTGCAGCAG
GTAACAGGACGAGCACCTGAGCCTGGGCAGCGGGTGCTTGTACTGGAGCTCAGCTTTGAG
GGTGAAGAGGAGGACACTGCCTTCCCACCCTTGCACTATGAGCTGTGAAAAGGCAGCAGC
CCCACTATCCAGCTCTGTCAAGCCCTGCGTCCCAAGCCCACAGTAGGTGCTCAATAAATG
CTTGTTGAAGGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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CGCATGGGTGCTCCCCTGAAACCCCTGATGTTTGAGAAGGACGATGACAGCAACTTCCAT
GTGGATTTTGTGGTCGCAGCAGCTAGCCTGCGAGCTCAGAACTATGGGATCCCACCAGCC
AACCGTGCCAAGAGCAAACAAATTGTGGGCCGGATTATCCCAGCCATTGCCACCACTACA
GCAGCTGTGGCTGGCCTGGTGTGCCTGGAGCTGTATAAGGTGGTGGGAGGGCCTCGGCCC
CTCACTGCCTTTCGCCACAGCTATCTGCACCTGGCTGAAAACTACTTTAGCCGCTGGGTA
CCTAGTGCCCCAGCCATCCAGAAGTTCCATGACCTGAAGTGGACCTGTTGGGACCGCCTG
GAAGTGCCTGCTGGGCAGCCCATGAGGACCTTGGAGTCATTGTTGGCCCATCTCCAGGAA
CTACATGAGCTGAGGGTGAGGATGCTGCTGCACGGGCCAGCCCTGCTCTACTCGGCAGGA
TGGTCGCCTGAAAAGCGGGCCCATCATCTCTCCCTCAGGGTGACAGATCTGGTGCAGCAG
GTAACAGGACGAGCACCTGAGCCTGGGCAGCGGGTGCTTGTACTGGAGCTCAGCTTTGAG
GGTGAAGAGGAGGACACTGCCTTCCCACCCTTGCACTATGAGCTGTGAAAAGGCAGCAGC
CCCACTATCCAGCTCTGTCAAGCCCTGCGTCCCAAGCCCACAGTAGGTGCTCAATAAATG
CTTGTTGAAGGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
131-324, gnl|bosTau2|chr22 (38150469-38150276) |
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131-324, gnl|Hg17|chr3 (49820366-49820173) |
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131-324, gnl|Mm7|chr9 (107713046-107713239) |
| |
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561-699, gnl|bosTau2|chr22 (38147994-38147856) |
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561-699, gnl|canFam2|chr20 (42468855-42468314) |
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561-699, gnl|dasNov1|scaffold_78386 (9825-9284) |
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561-699, gnl|hg17|chr3 (49817619-49818167) |
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561-699, gnl|Hg17|chr3 (49817850-49817694) |
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561-699, gnl|loxAfr1|scaffold_16268 (37328-36807) |
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561-699, gnl|mm7|chr9 (107715737-107715178) |
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561-699, gnl|Mm7|chr9 (107715499-107715659) |
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561-699, gnl|monDom2|scaffold_5 (74920781-74920210) |
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561-699, gnl|panTro1|chr2 (51395107-51395656) |
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561-699, gnl|rheMac2|chr2 (86603067-86602518) |
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561-699, gnl|rn3|chr8 (113273111-113272554) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
131-324, gnl|bosTau2|chr22 (38150469-38150276) |
|
131-324, gnl|Hg17|chr3 (49820366-49820173) |
|
131-324, gnl|Mm7|chr9 (107713046-107713239) |
| |
|
561-699, gnl|bosTau2|chr22 (38147994-38147856) |
|
561-699, gnl|canFam2|chr20 (42468855-42468314) |
|
561-699, gnl|dasNov1|scaffold_78386 (9825-9284) |
|
561-699, gnl|hg17|chr3 (49817619-49818167) |
|
561-699, gnl|Hg17|chr3 (49817850-49817694) |
|
561-699, gnl|loxAfr1|scaffold_16268 (37328-36807) |
|
561-699, gnl|mm7|chr9 (107715737-107715178) |
|
561-699, gnl|Mm7|chr9 (107715499-107715659) |
|
561-699, gnl|monDom2|scaffold_5 (74920781-74920210) |
|
561-699, gnl|panTro1|chr2 (51395107-51395656) |
|
561-699, gnl|rheMac2|chr2 (86603067-86602518) |
|
561-699, gnl|rn3|chr8 (113273111-113272554) |
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lnt (0.284616) |
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nmm (0.132802) |
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lnt (0.284616) |
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nmm (0.132802) |