Non-Coding RNA Search

Ss1.1-Mixn-0026f17.5

Sequence:


               
               GCAATTGGTGAGACAATATTTAATCCTATTTCCACTTCCTTTAACCTTGTTTGTGGTGGC
CTCCCTTTTATAGCTTGTTCAAAGATCCCTTTTTGGAGACTTGCAAAGATTTGATCTAAC
TGAACATTATAGTGAGATTTAGCCTTTTGAATTGGAAGTACATTAGCAATAATGTAGTCC
AACTCTTATTTCCCAGTTGATGAAGTCAGAGTGTGTGAGATTTTTAAGGGTTTTGTTTGT
TTGTTTGTTTGT------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------GAAACCAATGAGCTGCAATGGGAA
CAAGGGTGTTTTAGATACTCACTTAAATGATAGATGAACCACGATACTTCTGTTTTAAGC
ATAGTTCATTTTTTTTTAATGTGGCATAGCTTATAGTCACATTGAAGAAGTGCTGCCCAG
CTGAGTGTTAGCTCTGGCACAAGTGTGTCCCAGCAGAATTCTTACAAGGTTACCCATTTT
AGGCATCTTGCTTATTCTCAAAAAATACATCAGTCTGGGCAGAAACCATGAGGCTTGTCA
TAGGTTTAAAAAAAAAAGACAATTATAACTTTTCTGAAACAGGAGATGGGACGGTCACAC
CCCGAGCAGAGACTGTCACAGCATAATGGAGACAAGTGGCAATAATTACTCCATGGCTCC
ATCACCTGAAAGTCTGAGTCACCCAGGACTTTGCCTTAAGCTGGAGTAACTCAGCACTTG
GCATGCGTTTCTGGCATTTTCATTTTTCAAAATTATATTGGTTTTCTTTGCATTGCTGTA
AGAATACCATCTCCAGAAAAATTCAACGAGAGGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAATTGGTGAGACAATATTTAATCCTATTTCCACTTCCTTTAACCTTGTTTGTGGTGGC
CTCCCTTTTATAGCTTGTTCAAAGATCCCTTTTTGGAGACTTGCAAAGATTTGATCTAAC
TGAACATTATAGTGAGATTTAGCCTTTTGAATTGGAAGTACATTAGCAATAATGTAGTCC
AACTCTTATTTCCCAGTTGATGAAGTCAGAGTGTGTGAGATTTTTAAGGGTTTTGTTTGT
TTGTTTGTTTGT------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------GAAACCAATGAGCTGCAATGGGAA
CAAGGGTGTTTTAGATACTCACTTAAATGATAGATGAACCACGATACTTCTGTTTTAAGC
ATAGTTCATTTTTTTTTAATGTGGCATAGCTTATAGTCACATTGAAGAAGTGCTGCCCAG
CTGAGTGTTAGCTCTGGCACAAGTGTGTCCCAGCAGAATTCTTACAAGGTTACCCATTTT
AGGCATCTTGCTTATTCTCAAAAAATACATCAGTCTGGGCAGAAACCATGAGGCTTGTCA
TAGGTTTAAAAAAAAAAGACAATTATAACTTTTCTGAAACAGGAGATGGGACGGTCACAC
CCCGAGCAGAGACTGTCACAGCATAATGGAGACAAGTGGCAATAATTACTCCATGGCTCC
ATCACCTGAAAGTCTGAGTCACCCAGGACTTTGCCTTAAGCTGGAGTAACTCAGCACTTG
GCATGCGTTTCTGGCATTTTCATTTTTCAAAATTATATTGGTTTTCTTTGCATTGCTGTA
AGAATACCATCTCCAGAAAAATTCAACGAGAGGTAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               3-225, gnl|bosTau2|chr26 (25494143-25493923)
               

               
               3-225, gnl|Hg17|chr10 (121423923-121424144)
               

               
               3-225, gnl|Mm7|chr7 (124640893-124641114)
               


               
               376-788, gnl|bosTau2|chr26 (25493797-25493382)
               

               
               376-788, gnl|Hg17|chr10 (121424902-121425725)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-225, gnl|bosTau2|chr26 (25494143-25493923)
               

               
               3-225, gnl|Hg17|chr10 (121423923-121424144)
               

               
               3-225, gnl|Mm7|chr7 (124640893-124641114)
               


               
               376-788, gnl|bosTau2|chr26 (25493797-25493382)
               

               
               376-788, gnl|Hg17|chr10 (121424902-121425725)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	3-225, gnl\|bosTau2\|chr26 (25494143-25493923)
	3-225, gnl\|Hg17\|chr10 (121423923-121424144)
	3-225, gnl\|Mm7\|chr7 (124640893-124641114)

	376-788, gnl\|bosTau2\|chr26 (25493797-25493382)
	376-788, gnl\|Hg17\|chr10 (121424902-121425725)