Ss1.1-Mixn-0026f19.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GGTGGAGGAGATGGAAGAAGAGGAGGGGCGGGACCTGGACGCGGACTTGAACTACGAGAG TCAGCGTCGGGAAAGTACGGACGACGAGGACGACGAGGAGGCCAAGGCCTGGCTGCAGGC GCATCCCAGCGGGGCTTTGCCTCTGCCGCCACTGCCGAGGTACCGCTACTCGGAGGGCGA GCTGACCAGTCCGAAGGTTATTCCATTGACCTGTCATGTATGGCAACAGCCATCATATCA AGACAATAATGAAACACAGGTTTCTGATATGATTGTGGTCTCTTTGGAAGAAAAAGCTCA GTGGGCTTCTGGGGATGATCAGAGAACAGAATCTTGGCATTGTCTTCCTCAAGAAATGGA CTCTTCCCACACCTTGGATACTACCCAGACCAGGTTTAATGTGAGAGAGAAAGGGACTGA AGTGACAAACTTCCCTTCTCTGCAGGAGGGTATATTGACCAAATCAGAAAATCAAGTGAA GGAGCCCAGCAGAGATCTCTTATGTTCTCCATTGCTAGTCATACAAGACAGTTTTGCTTC TCCTGATTTGCCTTTGCTGACATGTTTGACAAAAGATCAAGAGTTTGGGCCTGATTCTTT ATTTCACCAAAGTGAACTAGATTTTGCACGTCTGAGGGGAATTCCTGGTAAGTCTGAAGA CACTGAATGGTTTTCTCGACCGTCGGAAGTTAGTGAAGCTTTATTCCAGGCAGCCTCAGA AGTAGCTTCAGACTTAGTTAGCTTTAGTGTATCCCAGCACCCACTTACAGGTAGTGAAGC TGTCGAGTCTCAGCGATCTTTATTAACTCCAGAACAAAGAACTAAAGAAGAGACTGTTGC ATCTGATACACTCGATGAACTGAAAACCCATAAAAACTCTGATAGTTATGATGCTCTTTG TTCATATATGTCATGGAAGACACAAGAAGTTATACAGGAGCCAGGAACAAATTTAGCTGA TGTTTCAGCTGCATCTGATACAAGTGATGAATACATAACTCCTAAAGGAAGTGACAGTTT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GGTGGAGGAGATGGAAGAAGAGGAGGGGCGGGACCTGGACGCGGACTTGAACTACGAGAG TCAGCGTCGGGAAAGTACGGACGACGAGGACGACGAGGAGGCCAAGGCCTGGCTGCAGGC GCATCCCAGCGGGGCTTTGCCTCTGCCGCCACTGCCGAGGTACCGCTACTCGGAGGGCGA GCTGACCAGTCCGAAGGTTATTCCATTGACCTGTCATGTATGGCAACAGCCATCATATCA AGACAATAATGAAACACAGGTTTCTGATATGATTGTGGTCTCTTTGGAAGAAAAAGCTCA GTGGGCTTCTGGGGATGATCAGAGAACAGAATCTTGGCATTGTCTTCCTCAAGAAATGGA CTCTTCCCACACCTTGGATACTACCCAGACCAGGTTTAATGTGAGAGAGAAAGGGACTGA AGTGACAAACTTCCCTTCTCTGCAGGAGGGTATATTGACCAAATCAGAAAATCAAGTGAA GGAGCCCAGCAGAGATCTCTTATGTTCTCCATTGCTAGTCATACAAGACAGTTTTGCTTC TCCTGATTTGCCTTTGCTGACATGTTTGACAAAAGATCAAGAGTTTGGGCCTGATTCTTT ATTTCACCAAAGTGAACTAGATTTTGCACGTCTGAGGGGAATTCCTGGTAAGTCTGAAGA CACTGAATGGTTTTCTCGACCGTCGGAAGTTAGTGAAGCTTTATTCCAGGCAGCCTCAGA AGTAGCTTCAGACTTAGTTAGCTTTAGTGTATCCCAGCACCCACTTACAGGTAGTGAAGC TGTCGAGTCTCAGCGATCTTTATTAACTCCAGAACAAAGAACTAAAGAAGAGACTGTTGC ATCTGATACACTCGATGAACTGAAAACCCATAAAAACTCTGATAGTTATGATGCTCTTTG TTCATATATGTCATGGAAGACACAAGAAGTTATACAGGAGCCAGGAACAAATTTAGCTGA TGTTTCAGCTGCATCTGATACAAGTGATGAATACATAACTCCTAAAGGAAGTGACAGTTT |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
635-747, + strand, RNAz p=0.939284 | |
879-983, - strand, RNAz p=0.993425 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
635-747, + strand, RNAz p=0.939284 | |
879-983, - strand, RNAz p=0.993425 |
Aligned organism(s): 25 entry(ies) | More info |
Aligned organism(s): 25 entry(ies) | Help | Less info |
1-192, gnl|bosTau2|chr11 (9139952-9140143) | |
1-192, gnl|Hg17|chr2 (73524777-73524968) | |
1-192, gnl|Mm7|chr6 (85617398-85617606) | |
321-524, gnl|bosTau2|chr11 (9181955-9182159) | |
321-524, gnl|canFam2|chr17 (52550461-52550224) | |
321-524, gnl|dasNov1|scaffold_167287 (3197-3434) | |
321-524, gnl|hg17|chr2 (73557890-73558123) | |
321-524, gnl|Hg17|chr2 (73557904-73558108) | |
321-524, gnl|loxAfr1|scaffold_10582 (34460-34697) | |
321-524, gnl|mm7|chr6 (85630825-85631066) | |
321-524, gnl|Mm7|chr6 (85630842-85631043) | |
321-524, gnl|panTro1|chr12 (75969119-75969352) | |
321-524, gnl|rheMac2|chr13 (73737723-73737956) | |
321-524, gnl|rn3|chr4 (120103380-120103607) | |
635-1020, gnl|bosTau2|chr11 (9187174-9187577) | |
635-1020, gnl|canFam2|chr17 (52544860-52544554) | |
635-1020, gnl|echTel1|scaffold_188075 (2541-2836) | |
635-1020, gnl|hg17|chr2 (73563163-73563466) | |
635-1020, gnl|Hg17|chr2 (73563211-73563611) | |
635-1020, gnl|loxAfr1|scaffold_10582 (41732-42028) | |
635-1020, gnl|mm7|chr6 (85638560-85638887) | |
635-1020, gnl|Mm7|chr6 (85638629-85639032) | |
635-1020, gnl|panTro1|chr12 (75974390-75974693) | |
635-1020, gnl|rheMac2|chr13 (73743006-73743307) | |
635-1020, gnl|rn3|chr4 (120110271-120110575) |
Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-192, gnl|bosTau2|chr11 (9139952-9140143) | |
1-192, gnl|Hg17|chr2 (73524777-73524968) | |
1-192, gnl|Mm7|chr6 (85617398-85617606) | |
321-524, gnl|bosTau2|chr11 (9181955-9182159) | |
321-524, gnl|canFam2|chr17 (52550461-52550224) | |
321-524, gnl|dasNov1|scaffold_167287 (3197-3434) | |
321-524, gnl|hg17|chr2 (73557890-73558123) | |
321-524, gnl|Hg17|chr2 (73557904-73558108) | |
321-524, gnl|loxAfr1|scaffold_10582 (34460-34697) | |
321-524, gnl|mm7|chr6 (85630825-85631066) | |
321-524, gnl|Mm7|chr6 (85630842-85631043) | |
321-524, gnl|panTro1|chr12 (75969119-75969352) | |
321-524, gnl|rheMac2|chr13 (73737723-73737956) | |
321-524, gnl|rn3|chr4 (120103380-120103607) | |
635-1020, gnl|bosTau2|chr11 (9187174-9187577) | |
635-1020, gnl|canFam2|chr17 (52544860-52544554) | |
635-1020, gnl|echTel1|scaffold_188075 (2541-2836) | |
635-1020, gnl|hg17|chr2 (73563163-73563466) | |
635-1020, gnl|Hg17|chr2 (73563211-73563611) | |
635-1020, gnl|loxAfr1|scaffold_10582 (41732-42028) | |
635-1020, gnl|mm7|chr6 (85638560-85638887) | |
635-1020, gnl|Mm7|chr6 (85638629-85639032) | |
635-1020, gnl|panTro1|chr12 (75974390-75974693) | |
635-1020, gnl|rheMac2|chr13 (73743006-73743307) | |
635-1020, gnl|rn3|chr4 (120110271-120110575) |
Expressed library(ies): 1 entry(ies) | More info |
Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
fat (0.147427) |