Non-Coding RNA Search

Ss1.1-Mixn-0026g07.5

Sequence:


               
               GACTTTATCCCCGATGACCCGGTCAACCTGTACGCCAACGCCGCCGACATCGACTACCTG
GCGGGCACCAACGACATGGACGGTCACTTGTTTGCCACCGTCGACCTGCCAGCCGTCGAC
AAGGACAAAAAGACCATCACGGAGGAGGACTTCTACAAGCTGGTCAGCGGATTCACCATT
GTCAAGGGGCCCAGAGGTGCCAACATCACCTTTGACGTGTACACCGCGTCCTGGGCCCAG
GACTCGTCCCAGGAGACCAAGAAGAAGACCGTGGTGGACCTGGAAACCGACATCCTCTTC
CTGATGCCCACGGAGACGGCCGTGGCCCAGCACAGGGCCAACGCCAAGAGCGCCCAGACC
TACACCTACGTGTTCGCCCACCCTTCTCGGATGCCCGTCTACCCCAGCTGGGTGGGGGCC
GACCACGCGGATGACCTCCAGTATGTCTTTGGGAAGCCCTTTGCCACTCCGCTGGGCTAC
CGGTCCCAAGACAGGACCGTCTCCAAGGCCATGATCGCCTACTGGACCAACTTTGCCAGA
AGCGGGGACCCTAACATGGGCGGGTCGAGTGTGCCCACACACTGGGAACCCTACACCCTA
GAAAGCAGCAAGTACCTGGAGATTACCAATAAGATGGACAGCAGCTCCATGAAGCAGGAC
CTGAGGACCAGCTATCTGCAGTACTGGGCCACCACCTACCAGGCACTGCCCACGGTGGCG
GATGAGGGGGCCATACCGGTGCCTCCGACGGGGGACTCGGAGGCCGCCCCATCCCCCCCT
ACTGGGGACTCGGAGGCCACCCCAGCCCCCCCCACGGGGGACCCGGAGGCCACCCCAGCA
CCCCCCACGGGGGACTCGGAGGCCACCCCAGCGCCCCCCCCCAGCGATGCTGAGGTGGCT
CAGATGCCCATAGTCATTGGCTTCTAGTGTCCTTGACCTCCAGAGGCCACAGGGTGGGAC
CCCAGCGGCCTTCTTCCCTCCCGAGCTTGTCCTCAATAAAGCCTCCTCTCTCAAAAAAAA
TCGGAGGCCGCCCCAGCGCCCCCCCCCAGCGATGCTGAGGTGGCTCAGATGCCCATAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTTTATCCCCGATGACCCGGTCAACCTGTACGCCAACGCCGCCGACATCGACTACCTG
GCGGGCACCAACGACATGGACGGTCACTTGTTTGCCACCGTCGACCTGCCAGCCGTCGAC
AAGGACAAAAAGACCATCACGGAGGAGGACTTCTACAAGCTGGTCAGCGGATTCACCATT
GTCAAGGGGCCCAGAGGTGCCAACATCACCTTTGACGTGTACACCGCGTCCTGGGCCCAG
GACTCGTCCCAGGAGACCAAGAAGAAGACCGTGGTGGACCTGGAAACCGACATCCTCTTC
CTGATGCCCACGGAGACGGCCGTGGCCCAGCACAGGGCCAACGCCAAGAGCGCCCAGACC
TACACCTACGTGTTCGCCCACCCTTCTCGGATGCCCGTCTACCCCAGCTGGGTGGGGGCC
GACCACGCGGATGACCTCCAGTATGTCTTTGGGAAGCCCTTTGCCACTCCGCTGGGCTAC
CGGTCCCAAGACAGGACCGTCTCCAAGGCCATGATCGCCTACTGGACCAACTTTGCCAGA
AGCGGGGACCCTAACATGGGCGGGTCGAGTGTGCCCACACACTGGGAACCCTACACCCTA
GAAAGCAGCAAGTACCTGGAGATTACCAATAAGATGGACAGCAGCTCCATGAAGCAGGAC
CTGAGGACCAGCTATCTGCAGTACTGGGCCACCACCTACCAGGCACTGCCCACGGTGGCG
GATGAGGGGGCCATACCGGTGCCTCCGACGGGGGACTCGGAGGCCGCCCCATCCCCCCCT
ACTGGGGACTCGGAGGCCACCCCAGCCCCCCCCACGGGGGACCCGGAGGCCACCCCAGCA
CCCCCCACGGGGGACTCGGAGGCCACCCCAGCGCCCCCCCCCAGCGATGCTGAGGTGGCT
CAGATGCCCATAGTCATTGGCTTCTAGTGTCCTTGACCTCCAGAGGCCACAGGGTGGGAC
CCCAGCGGCCTTCTTCCCTCCCGAGCTTGTCCTCAATAAAGCCTCCTCTCTCAAAAAAAA
TCGGAGGCCGCCCCAGCGCCCCCCCCCAGCGATGCTGAGGTGGCTCAGATGCCCATAGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3421403|gb|AAC71012.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3421403|gb|AAC71012.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               808-997, - strand, RNAz p=0.715932

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               808-997, - strand, RNAz p=0.715932

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               1-144, gnl|bosTau2|chr11 (83623373-83623516)
               

               
               1-144, gnl|canFam2|chr9 (54681065-54680863)
               

               
               1-144, gnl|danRer3|chr21 (2983887-2983720)
               

               
               1-144, gnl|dasNov1|scaffold_19948 (6132-5929)
               

               
               1-144, gnl|echTel1|scaffold_300382 (3191-2988)
               

               
               1-144, gnl|fr1|chrUn (202092444-202092627)
               

               
               1-144, gnl|hg17|chr9 (132973601-132973804)
               

               
               1-144, gnl|Hg17|chr9 (132973657-132973800)
               

               
               1-144, gnl|loxAfr1|scaffold_17196 (29071-29274)
               

               
               1-144, gnl|mm7|chr2 (28565442-28565239)
               

               
               1-144, gnl|Mm7|chr2 (28565384-28565241)
               

               
               1-144, gnl|monDom2|scaffold_51 (8939296-8939509)
               

               
               1-144, gnl|panTro1|chr11 (117858279-117858482)
               

               
               1-144, gnl|rheMac2|chr15 (5565115-5564912)
               

               
               1-144, gnl|rn3|chr3 (7543624-7543421)
               

               
               1-144, gnl|tetNig1|chrUn_random (12728829-12728653)
               

               
               1-144, gnl|xenTro1|scaffold_191 (1514668-1514861)
               


               
               345-546, gnl|bosTau2|chr11 (83625421-83625622)
               

               
               345-546, gnl|Hg17|chr9 (132975399-132975600)
               

               
               345-546, gnl|Mm7|chr2 (28564185-28563984)
               


               
               791-1005, gnl|bosTau2|chr11 (83626095-83626306)
               

               
               791-1005, gnl|Hg17|chr9 (132976107-132976793)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-144, gnl|bosTau2|chr11 (83623373-83623516)
               

               
               1-144, gnl|canFam2|chr9 (54681065-54680863)
               

               
               1-144, gnl|danRer3|chr21 (2983887-2983720)
               

               
               1-144, gnl|dasNov1|scaffold_19948 (6132-5929)
               

               
               1-144, gnl|echTel1|scaffold_300382 (3191-2988)
               

               
               1-144, gnl|fr1|chrUn (202092444-202092627)
               

               
               1-144, gnl|hg17|chr9 (132973601-132973804)
               

               
               1-144, gnl|Hg17|chr9 (132973657-132973800)
               

               
               1-144, gnl|loxAfr1|scaffold_17196 (29071-29274)
               

               
               1-144, gnl|mm7|chr2 (28565442-28565239)
               

               
               1-144, gnl|Mm7|chr2 (28565384-28565241)
               

               
               1-144, gnl|monDom2|scaffold_51 (8939296-8939509)
               

               
               1-144, gnl|panTro1|chr11 (117858279-117858482)
               

               
               1-144, gnl|rheMac2|chr15 (5565115-5564912)
               

               
               1-144, gnl|rn3|chr3 (7543624-7543421)
               

               
               1-144, gnl|tetNig1|chrUn_random (12728829-12728653)
               

               
               1-144, gnl|xenTro1|scaffold_191 (1514668-1514861)
               


               
               345-546, gnl|bosTau2|chr11 (83625421-83625622)
               

               
               345-546, gnl|Hg17|chr9 (132975399-132975600)
               

               
               345-546, gnl|Mm7|chr2 (28564185-28563984)
               


               
               791-1005, gnl|bosTau2|chr11 (83626095-83626306)
               

               
               791-1005, gnl|Hg17|chr9 (132976107-132976793)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-144, gnl\|bosTau2\|chr11 (83623373-83623516)
	1-144, gnl\|canFam2\|chr9 (54681065-54680863)
	1-144, gnl\|danRer3\|chr21 (2983887-2983720)
	1-144, gnl\|dasNov1\|scaffold_19948 (6132-5929)
	1-144, gnl\|echTel1\|scaffold_300382 (3191-2988)
	1-144, gnl\|fr1\|chrUn (202092444-202092627)
	1-144, gnl\|hg17\|chr9 (132973601-132973804)
	1-144, gnl\|Hg17\|chr9 (132973657-132973800)
	1-144, gnl\|loxAfr1\|scaffold_17196 (29071-29274)
	1-144, gnl\|mm7\|chr2 (28565442-28565239)
	1-144, gnl\|Mm7\|chr2 (28565384-28565241)
	1-144, gnl\|monDom2\|scaffold_51 (8939296-8939509)
	1-144, gnl\|panTro1\|chr11 (117858279-117858482)
	1-144, gnl\|rheMac2\|chr15 (5565115-5564912)
	1-144, gnl\|rn3\|chr3 (7543624-7543421)
	1-144, gnl\|tetNig1\|chrUn_random (12728829-12728653)
	1-144, gnl\|xenTro1\|scaffold_191 (1514668-1514861)

	345-546, gnl\|bosTau2\|chr11 (83625421-83625622)
	345-546, gnl\|Hg17\|chr9 (132975399-132975600)
	345-546, gnl\|Mm7\|chr2 (28564185-28563984)

	791-1005, gnl\|bosTau2\|chr11 (83626095-83626306)
	791-1005, gnl\|Hg17\|chr9 (132976107-132976793)