Ss1.1-Mixn-0026g12.5
|
TGGATAATAAGGGTCCCACTGCCAGACAGGATGGGCCTATGGGGCAAAAAAAGGTGGGGG
GATGTAGAAAGGTTTAATTTAATGACGGTCACCCATCTATGGCCATTTGGTGCCTGGGAG
ATGAGCACAATATTAAAAAGGACATCTGGTCTACCTTTCTGAACGCATTTAACATGTGCA
TTTTGGGGGTACTCTTTCTGCTTTTTAAAAGAGATGTGAATTTAAAGGCCTTACCTGGTG
TTTCCACTGGTAACCGATTGCTCCTTCTTCCCATTGGCCCATTTATCCTGTGTCCATCTC
TCGTCCACACACGTGTGACCCTGGATGGGTTATGTCCTAATAACAACAGCCCGCAGGTAA
TCAAGCTTCTGCAGCTCCCCTGAGCCCCGTCCAAGGGCCGGAGGAGGCAGCCAGCTGAAC
AAACAAAAGCACAACTCAGTGAGGGCTGTGGGCCACCAGCAGCTCAGGCCTGGCTACACA
CACAGCTGAAGGGGCCCCTCTCCCTTTGGGGACAATGAGTACGCATTTGGGGGTCCAAGA
GGAAAACGAGGGAGCTTTGTAAGCTGTGCCAGGCGGTCCCCCTTGTTTTCATTGTTAAAA
TCCCAAGCTCAAAGCCCTTCTTTGACTCAAGGGGAAACGAGAAGACTCAGCCCTGAAGCC
TGGAAACAGCCTTGGATGGTGGTGAAGGTGACGGAGGGTTGATAGAGTCACGGGGCCTGG
ATTTGCATCCACACATGGGGTTTCAGTCAGAATCCCCCAGGCCCTTTCATGGTCGAACTG
GGGTCTCTTGTCTTGGGATGAACGTCGACCTGCCCAAGGGAAGCCCTCGGGAAAGAGTCA
CCTCTGCGTGTTGTTCAGGCCCTGGGCCACGATCCCACCCCCGCCCCTCTCCCCACCCCT
CCCCGAGTCTGCTGCAGACCTGCCCTGTGGCTCTGAAAACGAGCAGAAGCCACTGTCCCT
GTCCCTTGGAGGCAGGACCCCCATCTGCTATTGGGGCAGCACCTGCCTCCGCAGGGCGCC
CAGGAAGCACAGCGTCCCGGCCTCTGCTGCGGGCTCCCCACCCACCCCCGAGCCCAGTTC
AGACGGCCTCGGGGGGGCAGCCCGGGAATCCCGTTTGTCTTGCCTGGAAAGTCGACTCTT
CTTCCCCTTCAGTCAAAGAAAGCGCTTTATACATAAGGCAGGGGTGCCGGCAGCGTCCTC
TTGGCTCTGACGTCTGTCTCTGTTGCCTGCGGCTGCGGTCAAAGGCCAAACAGCGATTGG
AAGACAAGCGTTCTGATCACCTTGCTTTCTCGGTCACTGTGTGACCCACTTAAGTCTTTC
TCTCCATGTGCTCCGTGAATGAAGACTGCAAACCAGTGTTTTAAAAGGTATTTTTATGTG
TTTTTAAAAACTTTTTAAAACGAGCCTGACACCTCTGTTTCAGCATCTGGAGACATGCCC
ATGTTATTAATTTTTTAAGATACTGATACTTCTGTTGTGTTTCACTAAGTTGTGTTTAAT
CGATGTGCAATCTTTAATATATGTATGTACTCCAGTTTCAGCTATCATTTTTTTTCTTTT
ATTCCGTTTGTCATTTGATCTTGCTCTGATGATAATGCCAGTGAATGTTGCTGAATTCTT
TGTATATGCAAATCGCAAGATCCGAGACATTCTGATGCAAAGGTAAAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGGATAATAAGGGTCCCACTGCCAGACAGGATGGGCCTATGGGGCAAAAAAAGGTGGGGG
GATGTAGAAAGGTTTAATTTAATGACGGTCACCCATCTATGGCCATTTGGTGCCTGGGAG
ATGAGCACAATATTAAAAAGGACATCTGGTCTACCTTTCTGAACGCATTTAACATGTGCA
TTTTGGGGGTACTCTTTCTGCTTTTTAAAAGAGATGTGAATTTAAAGGCCTTACCTGGTG
TTTCCACTGGTAACCGATTGCTCCTTCTTCCCATTGGCCCATTTATCCTGTGTCCATCTC
TCGTCCACACACGTGTGACCCTGGATGGGTTATGTCCTAATAACAACAGCCCGCAGGTAA
TCAAGCTTCTGCAGCTCCCCTGAGCCCCGTCCAAGGGCCGGAGGAGGCAGCCAGCTGAAC
AAACAAAAGCACAACTCAGTGAGGGCTGTGGGCCACCAGCAGCTCAGGCCTGGCTACACA
CACAGCTGAAGGGGCCCCTCTCCCTTTGGGGACAATGAGTACGCATTTGGGGGTCCAAGA
GGAAAACGAGGGAGCTTTGTAAGCTGTGCCAGGCGGTCCCCCTTGTTTTCATTGTTAAAA
TCCCAAGCTCAAAGCCCTTCTTTGACTCAAGGGGAAACGAGAAGACTCAGCCCTGAAGCC
TGGAAACAGCCTTGGATGGTGGTGAAGGTGACGGAGGGTTGATAGAGTCACGGGGCCTGG
ATTTGCATCCACACATGGGGTTTCAGTCAGAATCCCCCAGGCCCTTTCATGGTCGAACTG
GGGTCTCTTGTCTTGGGATGAACGTCGACCTGCCCAAGGGAAGCCCTCGGGAAAGAGTCA
CCTCTGCGTGTTGTTCAGGCCCTGGGCCACGATCCCACCCCCGCCCCTCTCCCCACCCCT
CCCCGAGTCTGCTGCAGACCTGCCCTGTGGCTCTGAAAACGAGCAGAAGCCACTGTCCCT
GTCCCTTGGAGGCAGGACCCCCATCTGCTATTGGGGCAGCACCTGCCTCCGCAGGGCGCC
CAGGAAGCACAGCGTCCCGGCCTCTGCTGCGGGCTCCCCACCCACCCCCGAGCCCAGTTC
AGACGGCCTCGGGGGGGCAGCCCGGGAATCCCGTTTGTCTTGCCTGGAAAGTCGACTCTT
CTTCCCCTTCAGTCAAAGAAAGCGCTTTATACATAAGGCAGGGGTGCCGGCAGCGTCCTC
TTGGCTCTGACGTCTGTCTCTGTTGCCTGCGGCTGCGGTCAAAGGCCAAACAGCGATTGG
AAGACAAGCGTTCTGATCACCTTGCTTTCTCGGTCACTGTGTGACCCACTTAAGTCTTTC
TCTCCATGTGCTCCGTGAATGAAGACTGCAAACCAGTGTTTTAAAAGGTATTTTTATGTG
TTTTTAAAAACTTTTTAAAACGAGCCTGACACCTCTGTTTCAGCATCTGGAGACATGCCC
ATGTTATTAATTTTTTAAGATACTGATACTTCTGTTGTGTTTCACTAAGTTGTGTTTAAT
CGATGTGCAATCTTTAATATATGTATGTACTCCAGTTTCAGCTATCATTTTTTTTCTTTT
ATTCCGTTTGTCATTTGATCTTGCTCTGATGATAATGCCAGTGAATGTTGCTGAATTCTT
TGTATATGCAAATCGCAAGATCCGAGACATTCTGATGCAAAGGTAAAT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-261, gnl|bosTau2|chr26 (33650565-33650832) |
|
1-261, gnl|Hg17|chr10 (129772349-129772623) |
|
1-261, gnl|Mm7|chr7 (132089582-132089851) |
| |
|
318-835, gnl|bosTau2|chr26 (33650842-33651353) |
|
318-835, gnl|canFam2|chr28 (39901951-39902494) |
|
318-835, gnl|dasNov1|scaffold_217402 (3817-4337) |
|
318-835, gnl|hg17|chr10 (129772603-129773151) |
|
318-835, gnl|Hg17|chr10 (129772677-129773234) |
|
318-835, gnl|loxAfr1|scaffold_19028 (17289-17818) |
|
318-835, gnl|mm7|chr7 (132089829-132090316) |
|
318-835, gnl|Mm7|chr7 (132089895-132090375) |
|
318-835, gnl|panTro1|chr8_random (9880468-9881169) |
|
318-835, gnl|rheMac2|chr9 (127715341-127715884) |
|
318-835, gnl|rn3|chr1 (195454774-195455216) |
| |
|
996-1668, gnl|bosTau2|chr26 (33651473-33652140) |
|
996-1668, gnl|Hg17|chr10 (129773383-129774092) |
|
996-1668, gnl|Mm7|chr7 (132090509-132091169) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-261, gnl|bosTau2|chr26 (33650565-33650832) |
|
1-261, gnl|Hg17|chr10 (129772349-129772623) |
|
1-261, gnl|Mm7|chr7 (132089582-132089851) |
| |
|
318-835, gnl|bosTau2|chr26 (33650842-33651353) |
|
318-835, gnl|canFam2|chr28 (39901951-39902494) |
|
318-835, gnl|dasNov1|scaffold_217402 (3817-4337) |
|
318-835, gnl|hg17|chr10 (129772603-129773151) |
|
318-835, gnl|Hg17|chr10 (129772677-129773234) |
|
318-835, gnl|loxAfr1|scaffold_19028 (17289-17818) |
|
318-835, gnl|mm7|chr7 (132089829-132090316) |
|
318-835, gnl|Mm7|chr7 (132089895-132090375) |
|
318-835, gnl|panTro1|chr8_random (9880468-9881169) |
|
318-835, gnl|rheMac2|chr9 (127715341-127715884) |
|
318-835, gnl|rn3|chr1 (195454774-195455216) |
| |
|
996-1668, gnl|bosTau2|chr26 (33651473-33652140) |
|
996-1668, gnl|Hg17|chr10 (129773383-129774092) |
|
996-1668, gnl|Mm7|chr7 (132090509-132091169) |
