Ss1.1-Mixn-0026g14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCTTCGACTGCTTGTCGTCCCCAGAGCGGGCCGAGCCGCCGGCAGGAGGGTGGCGGGC GAGCCTGGGCGAGCCGCCGCCGCCTCCACGGGCCTCGCTGAGCTCGGACACCAGCGCCCT GTCCTACGACTCGGTCAAGTACACGCTGGTGGTGGATGAGCACGCACAGCTGGAGCTGGT GAGCCTGCGGCCGTGCTTCGGTGACTACAGTGACGAGAGTGACTCGGCCACCGTCTACGA CAACTGCGCCTCCGCCTCCTCCCCCTACGAGTCGGCCATCGGGGAGGAGTACGAGGAGGC GCCCCGGCCGCGGCCCTCTGCCTGCCTCTCCGAGGACTCCACACCCGACGAACCTGACGT CCACTTCTCCAAGAAGTTCCTGAACGTCTTCATGAGCGGCCGCTCTCGCTCCTCCAGTGC CGAGTCCTTCGGGCTCTTCTCCTGTGTCATCAACGGGGAGGAGCAGGAGCAGACCCACCG GGCCATATTCAGGTTTGTGCCTCGACATGAAGACGAACTTGAGCTGGAAGTGGACGATCC TCTGCTGGTGGAGCTGCAGGCCGAGGACTACTGGTACGAGGCCTACAACATGCGCACAGG TGCCCGCGGCATCTTTCCTGCCTACTACGCCATCGAGGTCACCAAGGAGCCTGAACATAT GGCAGCCCTGACCAAAAACAGCGACTGGGTGGACCAGTTCCGGGTGAAGTTCCTGGGCTC AGTCCAGGTTCCCTATCACAAGGGCAATGACGTGCTCTGTGCCGCTATGCAAAAGATTGC CACCACCCGCCGGCTCACCGTGCACTTTAACCCGCCCTCCAGCTGCATCCTAGAGATCAG CGTGCGGGGCGTGAAGATAGGCGTCAAGGCTGATGACTCCCAGGAGGCCAAGGGGAATAA ATGTAGCCACTTTTTCCAGTTAAAAAACATCTCTTTCTGCGGATACCATCCAAAGAACAA CAAGTACTTTGGGTTCATCACCAAGCACCCTGCTGACCACCGGTTTGCCTGCCACGTCTT TGTGTCTGAAGAATCCACCAAAGCCCTGGCAGAATCCGTGGGGAGAGCGTTCCAGCAGTT CTACAAGCAGTTCGTGGAGTACACCTGCCCCACAGAAGATATCTACCTGGAGTAGCAGCG CTGCCCCACCCTCTGCATCCCCCGGACCCTCAGGCCGGTGCCAGGACAGCTGGCTCCTGA CCAGACGTGGCACTGCCTGAGGACGGGCACCCGCCACCACCAGAGGATGGGGAAGTGGGG GGCGGTTGGCTGAGGGTGGGGAGGGCGGGGGTTATGGGGAGAGGCAGATGCAGTTTATTG TAACATATGGGATTAGATTCATCTATGGAGGCTGGCACGGGCTGCCCGGGGATTGGGAGG GAGCAGGGCTGGGGGTCTTCAAGCCCCTGGCCAGGAAGGGTGCCCATCCTGGGAGCAGAG GGCCTTGTCCCATCTTGGGCCTCACTCACTCCCCTGCCAGGGCCCCTGGGCCTCTGGCCA CTGGCTCCTGCGACTGCCCACGCCAACCCTGCCCCTAATTCCCAACCCCAACCGAGGGGT TCTGAGCTCAGGCTGAGCCCAGCCACCTACCGAGGACTTTGCAGTAAGGAAACGGCGGCA GGTAGAGGTGCGGTCCCTGTTCCCAGCCCTGTCACTCGTGTGGCCTCTGGATGGCTCCCA CCGCCAGCCTCACTGGCATGCTGGCCCCTGGCAGGTGTGGGGCCTCACAGGGAAGGAGAG AGCCACAACGGGGCCCTGCCCCGGCAGGAAAAGGAGGCTTCCCGCCCTGGCCCGGGCCAG TCGGGGCCTCTCGGCTGCTTCAGCTGTCGCCCCATCTTGGTCCTGTCACCCTGGCCACAC CTATTAAAGTGCCATTTCCTGTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCTTCGACTGCTTGTCGTCCCCAGAGCGGGCCGAGCCGCCGGCAGGAGGGTGGCGGGC GAGCCTGGGCGAGCCGCCGCCGCCTCCACGGGCCTCGCTGAGCTCGGACACCAGCGCCCT GTCCTACGACTCGGTCAAGTACACGCTGGTGGTGGATGAGCACGCACAGCTGGAGCTGGT GAGCCTGCGGCCGTGCTTCGGTGACTACAGTGACGAGAGTGACTCGGCCACCGTCTACGA CAACTGCGCCTCCGCCTCCTCCCCCTACGAGTCGGCCATCGGGGAGGAGTACGAGGAGGC GCCCCGGCCGCGGCCCTCTGCCTGCCTCTCCGAGGACTCCACACCCGACGAACCTGACGT CCACTTCTCCAAGAAGTTCCTGAACGTCTTCATGAGCGGCCGCTCTCGCTCCTCCAGTGC CGAGTCCTTCGGGCTCTTCTCCTGTGTCATCAACGGGGAGGAGCAGGAGCAGACCCACCG GGCCATATTCAGGTTTGTGCCTCGACATGAAGACGAACTTGAGCTGGAAGTGGACGATCC TCTGCTGGTGGAGCTGCAGGCCGAGGACTACTGGTACGAGGCCTACAACATGCGCACAGG TGCCCGCGGCATCTTTCCTGCCTACTACGCCATCGAGGTCACCAAGGAGCCTGAACATAT GGCAGCCCTGACCAAAAACAGCGACTGGGTGGACCAGTTCCGGGTGAAGTTCCTGGGCTC AGTCCAGGTTCCCTATCACAAGGGCAATGACGTGCTCTGTGCCGCTATGCAAAAGATTGC CACCACCCGCCGGCTCACCGTGCACTTTAACCCGCCCTCCAGCTGCATCCTAGAGATCAG CGTGCGGGGCGTGAAGATAGGCGTCAAGGCTGATGACTCCCAGGAGGCCAAGGGGAATAA ATGTAGCCACTTTTTCCAGTTAAAAAACATCTCTTTCTGCGGATACCATCCAAAGAACAA CAAGTACTTTGGGTTCATCACCAAGCACCCTGCTGACCACCGGTTTGCCTGCCACGTCTT TGTGTCTGAAGAATCCACCAAAGCCCTGGCAGAATCCGTGGGGAGAGCGTTCCAGCAGTT CTACAAGCAGTTCGTGGAGTACACCTGCCCCACAGAAGATATCTACCTGGAGTAGCAGCG CTGCCCCACCCTCTGCATCCCCCGGACCCTCAGGCCGGTGCCAGGACAGCTGGCTCCTGA CCAGACGTGGCACTGCCTGAGGACGGGCACCCGCCACCACCAGAGGATGGGGAAGTGGGG GGCGGTTGGCTGAGGGTGGGGAGGGCGGGGGTTATGGGGAGAGGCAGATGCAGTTTATTG TAACATATGGGATTAGATTCATCTATGGAGGCTGGCACGGGCTGCCCGGGGATTGGGAGG GAGCAGGGCTGGGGGTCTTCAAGCCCCTGGCCAGGAAGGGTGCCCATCCTGGGAGCAGAG GGCCTTGTCCCATCTTGGGCCTCACTCACTCCCCTGCCAGGGCCCCTGGGCCTCTGGCCA CTGGCTCCTGCGACTGCCCACGCCAACCCTGCCCCTAATTCCCAACCCCAACCGAGGGGT TCTGAGCTCAGGCTGAGCCCAGCCACCTACCGAGGACTTTGCAGTAAGGAAACGGCGGCA GGTAGAGGTGCGGTCCCTGTTCCCAGCCCTGTCACTCGTGTGGCCTCTGGATGGCTCCCA CCGCCAGCCTCACTGGCATGCTGGCCCCTGGCAGGTGTGGGGCCTCACAGGGAAGGAGAG AGCCACAACGGGGCCCTGCCCCGGCAGGAAAAGGAGGCTTCCCGCCCTGGCCCGGGCCAG TCGGGGCCTCTCGGCTGCTTCAGCTGTCGCCCCATCTTGGTCCTGTCACCCTGGCCACAC CTATTAAAGTGCCATTTCCTGTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1141-1260, - strand, RNAz p=0.997858 | |
| 1341-1455, - strand, RNAz p=0.963337 | |
| 1656-1885, - strand, RNAz p=0.706318 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1141-1260, - strand, RNAz p=0.997858 | |
| 1341-1455, - strand, RNAz p=0.963337 | |
| 1656-1885, - strand, RNAz p=0.706318 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-419, gnl|bosTau2|chr15 (47723711-47724129) | |
| 1-419, gnl|Hg17|chr11 (45880896-45881314) | |
| 1-419, gnl|Mm7|chr2 (92237702-92237284) | |
| 490-665, gnl|bosTau2|chr15 (47725079-47725254) | |
| 490-665, gnl|canFam2|chr18 (46552895-46553062) | |
| 490-665, gnl|danRer3|chr1 (40664111-40664271) | |
| 490-665, gnl|dasNov1|scaffold_109456 (1287-1452) | |
| 490-665, gnl|echTel1|scaffold_311183 (43567-43401) | |
| 490-665, gnl|fr1|chrUn (162596098-162595938) | |
| 490-665, gnl|galGal2|chr5 (21214604-21214771) | |
| 490-665, gnl|Hg17|chr11 (45882113-45882288) | |
| 490-665, gnl|hg17|chr17 (41034492-41034659) | |
| 490-665, gnl|loxAfr1|scaffold_39929 (23224-23390) | |
| 490-665, gnl|mm7|chr2 (92236515-92236682) | |
| 490-665, gnl|Mm7|chr2 (92236686-92236511) | |
| 490-665, gnl|monDom2|scaffold_33 (11903872-11903705) | |
| 490-665, gnl|panTro1|chr19 (44386087-44386254) | |
| 490-665, gnl|rheMac2|chr14 (26229780-26229947) | |
| 490-665, gnl|rn3|chr3 (76680006-76680173) | |
| 490-665, gnl|tetNig1|chr5 (11691718-11691558) | |
| 490-665, gnl|xenTro1|scaffold_76 (1593522-1593355) | |
| 774-896, gnl|bosTau2|chr15 (47725670-47725792) | |
| 774-896, gnl|canFam2|chr18 (46552493-46552372) | |
| 774-896, gnl|danRer3|chr1 (40661605-40661504) | |
| 774-896, gnl|dasNov1|scaffold_109456 (1175-1055) | |
| 774-896, gnl|echTel1|scaffold_311183 (43975-44095) | |
| 774-896, gnl|fr1|chrUn (162596550-162596669) | |
| 774-896, gnl|galGal2|chr5 (21214152-21214029) | |
| 774-896, gnl|hg17|chr11 (45882843-45882964) | |
| 774-896, gnl|Hg17|chr11 (45882843-45882965) | |
| 774-896, gnl|loxAfr1|scaffold_39929 (22699-22579) | |
| 774-896, gnl|mm7|chr2 (92235983-92235862) | |
| 774-896, gnl|Mm7|chr2 (92235981-92235859) | |
| 774-896, gnl|monDom2|scaffold_33 (11904342-11904463) | |
| 774-896, gnl|panTro1|chr9 (46389307-46389428) | |
| 774-896, gnl|rheMac2|chr14 (26229217-26229096) | |
| 774-896, gnl|rn3|chr3 (76679527-76679406) | |
| 774-896, gnl|tetNig1|chrUn_random (108156003-108156146) | |
| 774-896, gnl|xenTro1|scaffold_76 (1594224-1594335) | |
| 1062-1885, gnl|bosTau2|chr15 (47726590-47727435) | |
| 1062-1885, gnl|Hg17|chr11 (45883775-45884590) | |
| 1062-1885, gnl|Mm7|chr2 (92235138-92234392) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-419, gnl|bosTau2|chr15 (47723711-47724129) | |
| 1-419, gnl|Hg17|chr11 (45880896-45881314) | |
| 1-419, gnl|Mm7|chr2 (92237702-92237284) | |
| 490-665, gnl|bosTau2|chr15 (47725079-47725254) | |
| 490-665, gnl|canFam2|chr18 (46552895-46553062) | |
| 490-665, gnl|danRer3|chr1 (40664111-40664271) | |
| 490-665, gnl|dasNov1|scaffold_109456 (1287-1452) | |
| 490-665, gnl|echTel1|scaffold_311183 (43567-43401) | |
| 490-665, gnl|fr1|chrUn (162596098-162595938) | |
| 490-665, gnl|galGal2|chr5 (21214604-21214771) | |
| 490-665, gnl|Hg17|chr11 (45882113-45882288) | |
| 490-665, gnl|hg17|chr17 (41034492-41034659) | |
| 490-665, gnl|loxAfr1|scaffold_39929 (23224-23390) | |
| 490-665, gnl|mm7|chr2 (92236515-92236682) | |
| 490-665, gnl|Mm7|chr2 (92236686-92236511) | |
| 490-665, gnl|monDom2|scaffold_33 (11903872-11903705) | |
| 490-665, gnl|panTro1|chr19 (44386087-44386254) | |
| 490-665, gnl|rheMac2|chr14 (26229780-26229947) | |
| 490-665, gnl|rn3|chr3 (76680006-76680173) | |
| 490-665, gnl|tetNig1|chr5 (11691718-11691558) | |
| 490-665, gnl|xenTro1|scaffold_76 (1593522-1593355) | |
| 774-896, gnl|bosTau2|chr15 (47725670-47725792) | |
| 774-896, gnl|canFam2|chr18 (46552493-46552372) | |
| 774-896, gnl|danRer3|chr1 (40661605-40661504) | |
| 774-896, gnl|dasNov1|scaffold_109456 (1175-1055) | |
| 774-896, gnl|echTel1|scaffold_311183 (43975-44095) | |
| 774-896, gnl|fr1|chrUn (162596550-162596669) | |
| 774-896, gnl|galGal2|chr5 (21214152-21214029) | |
| 774-896, gnl|hg17|chr11 (45882843-45882964) | |
| 774-896, gnl|Hg17|chr11 (45882843-45882965) | |
| 774-896, gnl|loxAfr1|scaffold_39929 (22699-22579) | |
| 774-896, gnl|mm7|chr2 (92235983-92235862) | |
| 774-896, gnl|Mm7|chr2 (92235981-92235859) | |
| 774-896, gnl|monDom2|scaffold_33 (11904342-11904463) | |
| 774-896, gnl|panTro1|chr9 (46389307-46389428) | |
| 774-896, gnl|rheMac2|chr14 (26229217-26229096) | |
| 774-896, gnl|rn3|chr3 (76679527-76679406) | |
| 774-896, gnl|tetNig1|chrUn_random (108156003-108156146) | |
| 774-896, gnl|xenTro1|scaffold_76 (1594224-1594335) | |
| 1062-1885, gnl|bosTau2|chr15 (47726590-47727435) | |
| 1062-1885, gnl|Hg17|chr11 (45883775-45884590) | |
| 1062-1885, gnl|Mm7|chr2 (92235138-92234392) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cbr (1.15178) | |
| fcc (0.593354) | |
| fbs (0.526039) | |
| hyp (0.42851) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| nep (0.183925) | |
| lnt (0.142308) | |
| ese (0.126502) | |
| eep (0.122564) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (1.15178) | |
| fcc (0.593354) | |
| fbs (0.526039) | |
| hyp (0.42851) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| nep (0.183925) | |
| lnt (0.142308) | |
| ese (0.126502) | |
| eep (0.122564) |