Non-Coding RNA Search

Ss1.1-Mixn-0026g16.5

Sequence:


               
               CGGGCCCGTAGCAGCGCGGACCCGGAGCGGCGGGAGCGCCCAACGCCTGCTCGGTCCGGA
TGCCCGCCGACGTGTTGTATAAACACTATATGTGAAGACTGGTGAATGGGAACATTGATT
TCTGAAGTGGCCTGGAGAGGACAAATGCTTGGTGTTTTCCTAAGATGCTGTTGAAGTAGT
CTTTGCCACTGCTTTCCTTCACTTAGTCAAAGCTCTTCATAACATGGGCTGCATGAAATC
AAAGCAAACTTTCCCATTTTCCACCACAATTGAGAGTGAGAAGAGGCCTGCAAGTCAAGA
AAGCTTTATGCCTGAAGAGAGATTTCTACCCAGGATACCTTCTCTAGTTAACATCAAAGA
GGAAGTGAAAGAACCCCCAGGGCCTGAAATTGTGGTGTCTGAATTTGCACACCGCCTGTC
CCAGGAAATCCTGACTGATGCCTTGCAGCAGTGGGCAGGCAACAACATCAAGTACTATGA
CATCCCGTATATTGAGAGTGATGGGCCTTGATGCTGCATGGAGGAGGATGACACTTCCTT
GAATTGTGGATAAAGTTGGTGCTAGTTTAAATACACAAAACAATAGCAAAAACTGGTGTG
AATAAATACAAATAACTCCATCTGGTATTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCCCGTAGCAGCGCGGACCCGGAGCGGCGGGAGCGCCCAACGCCTGCTCGGTCCGGA
TGCCCGCCGACGTGTTGTATAAACACTATATGTGAAGACTGGTGAATGGGAACATTGATT
TCTGAAGTGGCCTGGAGAGGACAAATGCTTGGTGTTTTCCTAAGATGCTGTTGAAGTAGT
CTTTGCCACTGCTTTCCTTCACTTAGTCAAAGCTCTTCATAACATGGGCTGCATGAAATC
AAAGCAAACTTTCCCATTTTCCACCACAATTGAGAGTGAGAAGAGGCCTGCAAGTCAAGA
AAGCTTTATGCCTGAAGAGAGATTTCTACCCAGGATACCTTCTCTAGTTAACATCAAAGA
GGAAGTGAAAGAACCCCCAGGGCCTGAAATTGTGGTGTCTGAATTTGCACACCGCCTGTC
CCAGGAAATCCTGACTGATGCCTTGCAGCAGTGGGCAGGCAACAACATCAAGTACTATGA
CATCCCGTATATTGAGAGTGATGGGCCTTGATGCTGCATGGAGGAGGATGACACTTCCTT
GAATTGTGGATAAAGTTGGTGCTAGTTTAAATACACAAAACAATAGCAAAAACTGGTGTG
AATAAATACAAATAACTCCATCTGGTATTAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14150094|ref|NP_115697.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14150094|ref|NP_115697.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               136-636, gnl|bosTau2|chr2 (5487267-5487766)
               

               
               136-636, gnl|Hg17|chr2 (190890011-190890488)
               

               
               136-636, gnl|Mm7|chr1 (53159177-53158682)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-636, gnl|bosTau2|chr2 (5487267-5487766)
               

               
               136-636, gnl|Hg17|chr2 (190890011-190890488)
               

               
               136-636, gnl|Mm7|chr1 (53159177-53158682)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tes (0.415628)
               

               
               cte (0.29274)
               

               
               hea (0.204499)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ova (0.129132)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               cte (0.29274)
               

               
               hea (0.204499)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ova (0.129132)

	136-636, gnl\|bosTau2\|chr2 (5487267-5487766)
	136-636, gnl\|Hg17\|chr2 (190890011-190890488)
	136-636, gnl\|Mm7\|chr1 (53159177-53158682)

	tes (0.415628)
	cte (0.29274)
	hea (0.204499)
	che (0.136314)
	cov (0.132153)
	ova (0.129132)