Ss1.1-Mixn-0026h10.5.5
|
TGAAGGCCGAGGTGCGGCTGCTGAAGGGCCCGCCGTCCTTCGAGGACCCGCTGGCCTTCG
ACGGGCTCAGCCTGGCACGGCACCTGGATGAGGACTCGCTGCCGTCGTCGGACGAGGAGC
TGCTCGGCGTGGGCGTGGGTGTGGGCGCGGCGCTGCAGGACGCGCTCTACCCACTGTCGC
CGCGAGACGCGCGCTTCTTCCGCCGTCTGGAGCGACCGGCCAAGGACAGTGAGGGCAGCT
CAGACAGCGACGCCGACGAACTGACCGCGCCCTACAGCCAAGGCCTGGACAACTGAGGCT
GTGCCCCACGTGCTTGGAGCCAAGGGGGCCGCCGCCCGCACTTAACAAACTCCACAAACT
CCACGTCCTCGGCGGCCCCGCCCACCCCGAGGGCCAGGCCCAGTGTGGCAGGGCACAGAG
GGTAGGGCCGGAGTCTGAGGATCCTCAGAGGCCCCTGGCAGGCCCACCCTCCGTAGCAGT
GTTTACCCATCTTGGTCCGCACCCCTCTGGGCCCTGGAGGGTCTGCTCCTCTTAACAGCT
AGGGCAGGGGAGGACCCAGGGATCCCAGAACTGGGCGCACAGGAAGCTCCCCGCTCCTAG
CAGGCCTCCTTCTGGGACAAGGGTGGCCCTGCTGGGAAGGGCCCAGGAGCTAGAGGAGAC
CTGAGGGAAAAGGGGCTGATCTAGGCGGGACTTTACCACCCCTGCGCTGGCCCTTGGGAC
CCTAGGCCTCTGGTGCAGGCATTGTGGCCCCTGAAGCAGAAACCAAAGTCCCCCCTCCTG
TGTGCAGGGCCACCAGGGGTGTGAGTGGCCAGCTGGAACCAGCCAGGACCTGGGCAAAGT
CTGTCCCTCCTTCTCAGGGCCAGAGCAGCTGTAAGGAAGTGAAGAGACCACCCCCACTCC
CTAGCGCCCCACATCTTCCCCTGTGAGACACTCCCATCATCCCAGCTTGGCCGGTGATGG
AGGGGCTCCCCCACCCACCCATGTTAGCCTCCTCTTCAGGGCGTCCCCAGCCTCCACTTC
CCTTCCTTCTCTGTGTCCCCAGTCCCACCCATCAGTCAAGGCCAGGCCCCAGGGGAGGAG
GCCGCCCAGCTGAGTTGCCTCCCCGCACCTGCTCACAGTGGTCCCGTGGTCTCTGCTGAG
TCAGAACCAAGAACGGTGCCAAAGTCTGCCAATGTCCCAGACCCCTCCCCACCCCGGGGC
CTCCTGACCCTCGGGCTGACCTTCTCGGTGCTCCTGGAGCCTAGAGCAGCATCACAAGCA
GTCTCCCTGGCGCTTCCTGGGGTGGGGTCCTTGCTCAGTGCCCTCCTTCCCGGCGCCCAC
TCCTCAGTGTTACACAGCCTGGGGACCAGGGTGGGCATCCAGGGGGCTCTCCCATGTGCC
CCCACACTGCCCACCACCATTTTGCACACTGCCTGTTCACACTCCACATGTCGCCCAGGC
GGGAAAGATGGAAAATAAAGTGTATTTACACAGTCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGAAGGCCGAGGTGCGGCTGCTGAAGGGCCCGCCGTCCTTCGAGGACCCGCTGGCCTTCG
ACGGGCTCAGCCTGGCACGGCACCTGGATGAGGACTCGCTGCCGTCGTCGGACGAGGAGC
TGCTCGGCGTGGGCGTGGGTGTGGGCGCGGCGCTGCAGGACGCGCTCTACCCACTGTCGC
CGCGAGACGCGCGCTTCTTCCGCCGTCTGGAGCGACCGGCCAAGGACAGTGAGGGCAGCT
CAGACAGCGACGCCGACGAACTGACCGCGCCCTACAGCCAAGGCCTGGACAACTGAGGCT
GTGCCCCACGTGCTTGGAGCCAAGGGGGCCGCCGCCCGCACTTAACAAACTCCACAAACT
CCACGTCCTCGGCGGCCCCGCCCACCCCGAGGGCCAGGCCCAGTGTGGCAGGGCACAGAG
GGTAGGGCCGGAGTCTGAGGATCCTCAGAGGCCCCTGGCAGGCCCACCCTCCGTAGCAGT
GTTTACCCATCTTGGTCCGCACCCCTCTGGGCCCTGGAGGGTCTGCTCCTCTTAACAGCT
AGGGCAGGGGAGGACCCAGGGATCCCAGAACTGGGCGCACAGGAAGCTCCCCGCTCCTAG
CAGGCCTCCTTCTGGGACAAGGGTGGCCCTGCTGGGAAGGGCCCAGGAGCTAGAGGAGAC
CTGAGGGAAAAGGGGCTGATCTAGGCGGGACTTTACCACCCCTGCGCTGGCCCTTGGGAC
CCTAGGCCTCTGGTGCAGGCATTGTGGCCCCTGAAGCAGAAACCAAAGTCCCCCCTCCTG
TGTGCAGGGCCACCAGGGGTGTGAGTGGCCAGCTGGAACCAGCCAGGACCTGGGCAAAGT
CTGTCCCTCCTTCTCAGGGCCAGAGCAGCTGTAAGGAAGTGAAGAGACCACCCCCACTCC
CTAGCGCCCCACATCTTCCCCTGTGAGACACTCCCATCATCCCAGCTTGGCCGGTGATGG
AGGGGCTCCCCCACCCACCCATGTTAGCCTCCTCTTCAGGGCGTCCCCAGCCTCCACTTC
CCTTCCTTCTCTGTGTCCCCAGTCCCACCCATCAGTCAAGGCCAGGCCCCAGGGGAGGAG
GCCGCCCAGCTGAGTTGCCTCCCCGCACCTGCTCACAGTGGTCCCGTGGTCTCTGCTGAG
TCAGAACCAAGAACGGTGCCAAAGTCTGCCAATGTCCCAGACCCCTCCCCACCCCGGGGC
CTCCTGACCCTCGGGCTGACCTTCTCGGTGCTCCTGGAGCCTAGAGCAGCATCACAAGCA
GTCTCCCTGGCGCTTCCTGGGGTGGGGTCCTTGCTCAGTGCCCTCCTTCCCGGCGCCCAC
TCCTCAGTGTTACACAGCCTGGGGACCAGGGTGGGCATCCAGGGGGCTCTCCCATGTGCC
CCCACACTGCCCACCACCATTTTGCACACTGCCTGTTCACACTCCACATGTCGCCCAGGC
GGGAAAGATGGAAAATAAAGTGTATTTACACAGTCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
|
gi|61822377|ref|XP_599461.1| |
Protein identifier
|
gi|61822377|ref|XP_599461.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
7-325, gnl|bosTau2|chr7 (12541758-12542076) |
|
7-325, gnl|canFam2|chr20 (55572828-55573058) |
|
7-325, gnl|dasNov1|scaffold_26501 (19451-19669) |
|
7-325, gnl|fr1|chrUn (232687623-232687448) |
|
7-325, gnl|hg17|chr19 (7834298-7834516) |
|
7-325, gnl|Hg17|chr19 (7834305-7834617) |
|
7-325, gnl|loxAfr1|scaffold_47815 (9723-9940) |
|
7-325, gnl|mm7|chr8 (4170749-4170977) |
|
7-325, gnl|Mm7|chr8 (4170760-4171082) |
|
7-325, gnl|monDom2|scaffold_54 (158436-158209) |
|
7-325, gnl|oryCun1|scaffold_197801 (812-587) |
|
7-325, gnl|panTro1|chr20 (8189937-8190155) |
|
7-325, gnl|rheMac2|chr19 (8058344-8058126) |
|
7-325, gnl|rn3|chr12 (1587981-1587747) |
|
7-325, gnl|xenTro1|scaffold_115 (1099191-1098964) |
| |
|
730-1476, gnl|bosTau2|chr7 (12542548-12543278) |
|
730-1476, gnl|Hg17|chr19 (7835155-7835862) |
|
730-1476, gnl|Mm7|chr8 (4171578-4172315) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
7-325, gnl|bosTau2|chr7 (12541758-12542076) |
|
7-325, gnl|canFam2|chr20 (55572828-55573058) |
|
7-325, gnl|dasNov1|scaffold_26501 (19451-19669) |
|
7-325, gnl|fr1|chrUn (232687623-232687448) |
|
7-325, gnl|hg17|chr19 (7834298-7834516) |
|
7-325, gnl|Hg17|chr19 (7834305-7834617) |
|
7-325, gnl|loxAfr1|scaffold_47815 (9723-9940) |
|
7-325, gnl|mm7|chr8 (4170749-4170977) |
|
7-325, gnl|Mm7|chr8 (4170760-4171082) |
|
7-325, gnl|monDom2|scaffold_54 (158436-158209) |
|
7-325, gnl|oryCun1|scaffold_197801 (812-587) |
|
7-325, gnl|panTro1|chr20 (8189937-8190155) |
|
7-325, gnl|rheMac2|chr19 (8058344-8058126) |
|
7-325, gnl|rn3|chr12 (1587981-1587747) |
|
7-325, gnl|xenTro1|scaffold_115 (1099191-1098964) |
| |
|
730-1476, gnl|bosTau2|chr7 (12542548-12543278) |
|
730-1476, gnl|Hg17|chr19 (7835155-7835862) |
|
730-1476, gnl|Mm7|chr8 (4171578-4172315) |
|
nco (0.323468) |
|
hyp (0.285673) |
|
med (0.232504) |
|
ece (0.229305) |
|
nje (0.16592) |
|
cly (0.120642) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
nco (0.323468) |
|
hyp (0.285673) |
|
med (0.232504) |
|
ece (0.229305) |
|
nje (0.16592) |
|
cly (0.120642) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
