Ss1.1-Mixn-0026h16.5
|
GGCGTACCTGCGCGTCAGCTGTTGGAGAGAGGACCTTTGGTTTTGGGAAACAGGTGTATG
GGGGGGTGACTGGACCCAGGACCTCTGGGTGGTAGGGATGCCGGGGAGTCTCAGGGATTC
TGGCAGCGGGAGCCTCGGAGCTCTGGCCGGGATGATGATAAGACACTTTACTGCCCAGGG
AGTGGTCAGGGAGATGCAGAAGGGCTGAGGGTATCCTCAGGAAGTCTGTGGCAGAGGGGG
CCAGCTGCCGGGCCCAAGGGTGGCTGTGGGTCCCCCAGGGTGACAGACTTGGTTGTGTCC
TCCCCCAGAACTGCCCTGTCCTAACCATGGACCCTGAGGTGTCCCTGCTGCTACAGTGCC
CCCCTGGCGGGTTGCCCGAGGAGCAAGTACGGGCTGAGCTGAGTCCAGCCTATGACCGTC
GCCCACTGCCAGGAGGGGACAAGGCCATCACTGCCATCTGGGAGAGCCGGCTTCGGGCCC
AGCCCTGGCTCTTTGATGCCCCCAAGTTCCGCCTACACTCCGCCACCCTGGTGCCCACTG
GCTCACCGGGGCCACAGCTGCTCCTGCACCTGGGCCTTACATCTTATCGAGACTTCCTGG
GCACCAACTGGGCCAGCTCAGCTGCCTGGCTGCGACAGCAGGGGGCCACCGACTGGGGTG
ACAAGCAAGCCTACCTGGCGGACCCCCTGGGGGTGGGGGCTGCCCTGGCCACCGCTGATG
GCTTCCTTGTCTTTCTGCGCCGCTCTGGGCAGGTGGCTGAGGCACCTGGGCTGGTGGACG
TGCCTGGTGGGCACCCTGAACCTAAGGCCCTGTGCCCAGGTGACAGCCCCCTGCACAAGG
ACCTCCCTGGGGAGCTGGTGGTACATGAGCTCTTCTCCAGTGTCCTCCAGGAGATCTGTG
ATGAGGTGAACCTGCCGCTGCTCACCCTGAGCCGGCCGCTGCTATTGGGCATCGCCCGCA
ATGAGACCAGTGCCGGCCGTGCCAGTGCCGAGTTCTACGTCCAGTGCAGCCTGTCTTCTG
AGCAGGTGAGGAAGCACTACATGAGTGGGGGACCTGAGGCCCATGAATCCACGGGAATTA
TCTTTGTGGAGACACAGAAGGTGCGGAGGTTGCAGGAGACTGAAATGTGGTCCCAGCTCT
GCCCATCGGCCAAAGGCGCCATCTTCCTCTACAGTCGGGTCCAGGGAAACTCCACCTGAG
TTGCCCTGAGTCCCCAGCCCTGTCACCACCGCTCGGAAGACAATAAAGGACTTTATTCTT
GGAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCGTACCTGCGCGTCAGCTGTTGGAGAGAGGACCTTTGGTTTTGGGAAACAGGTGTATG
GGGGGGTGACTGGACCCAGGACCTCTGGGTGGTAGGGATGCCGGGGAGTCTCAGGGATTC
TGGCAGCGGGAGCCTCGGAGCTCTGGCCGGGATGATGATAAGACACTTTACTGCCCAGGG
AGTGGTCAGGGAGATGCAGAAGGGCTGAGGGTATCCTCAGGAAGTCTGTGGCAGAGGGGG
CCAGCTGCCGGGCCCAAGGGTGGCTGTGGGTCCCCCAGGGTGACAGACTTGGTTGTGTCC
TCCCCCAGAACTGCCCTGTCCTAACCATGGACCCTGAGGTGTCCCTGCTGCTACAGTGCC
CCCCTGGCGGGTTGCCCGAGGAGCAAGTACGGGCTGAGCTGAGTCCAGCCTATGACCGTC
GCCCACTGCCAGGAGGGGACAAGGCCATCACTGCCATCTGGGAGAGCCGGCTTCGGGCCC
AGCCCTGGCTCTTTGATGCCCCCAAGTTCCGCCTACACTCCGCCACCCTGGTGCCCACTG
GCTCACCGGGGCCACAGCTGCTCCTGCACCTGGGCCTTACATCTTATCGAGACTTCCTGG
GCACCAACTGGGCCAGCTCAGCTGCCTGGCTGCGACAGCAGGGGGCCACCGACTGGGGTG
ACAAGCAAGCCTACCTGGCGGACCCCCTGGGGGTGGGGGCTGCCCTGGCCACCGCTGATG
GCTTCCTTGTCTTTCTGCGCCGCTCTGGGCAGGTGGCTGAGGCACCTGGGCTGGTGGACG
TGCCTGGTGGGCACCCTGAACCTAAGGCCCTGTGCCCAGGTGACAGCCCCCTGCACAAGG
ACCTCCCTGGGGAGCTGGTGGTACATGAGCTCTTCTCCAGTGTCCTCCAGGAGATCTGTG
ATGAGGTGAACCTGCCGCTGCTCACCCTGAGCCGGCCGCTGCTATTGGGCATCGCCCGCA
ATGAGACCAGTGCCGGCCGTGCCAGTGCCGAGTTCTACGTCCAGTGCAGCCTGTCTTCTG
AGCAGGTGAGGAAGCACTACATGAGTGGGGGACCTGAGGCCCATGAATCCACGGGAATTA
TCTTTGTGGAGACACAGAAGGTGCGGAGGTTGCAGGAGACTGAAATGTGGTCCCAGCTCT
GCCCATCGGCCAAAGGCGCCATCTTCCTCTACAGTCGGGTCCAGGGAAACTCCACCTGAG
TTGCCCTGAGTCCCCAGCCCTGTCACCACCGCTCGGAAGACAATAAAGGACTTTATTCTT
GGAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
19-807, gnl|bosTau2|chr29 (33346873-33347666) |
|
19-807, gnl|Hg17|chr11 (63750418-63751181) |
|
19-807, gnl|Mm7|chr19 (6815855-6815105) |
| |
|
904-1006, gnl|bosTau2|chr29 (33348679-33348781) |
|
904-1006, gnl|canFam2|chr18 (55855754-55855624) |
|
904-1006, gnl|dasNov1|scaffold_265578 (3293-3424) |
|
904-1006, gnl|echTel1|scaffold_283541 (8117-7982) |
|
904-1006, gnl|fr1|chrUn (49437496-49437633) |
|
904-1006, gnl|hg17|chr11 (63753279-63753418) |
|
904-1006, gnl|Hg17|chr11 (63753293-63753395) |
|
904-1006, gnl|loxAfr1|scaffold_29620 (7080-7217) |
|
904-1006, gnl|mm7|chr19 (6813631-6813500) |
|
904-1006, gnl|Mm7|chr19 (6813625-6813523) |
|
904-1006, gnl|monDom2|scaffold_1079 (8537-8358) |
|
904-1006, gnl|panTro1|chr9 (64740524-64740662) |
|
904-1006, gnl|rheMac2|chr14 (10199740-10199601) |
|
904-1006, gnl|rn3|chr1 (209825306-209825168) |
|
904-1006, gnl|tetNig1|chr1 (8130412-8130525) |
| |
|
1093-1263, gnl|bosTau2|chr29 (33349290-33349460) |
|
1093-1263, gnl|Hg17|chr11 (63753893-63754064) |
|
1093-1263, gnl|Mm7|chr19 (6813071-6812882) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
19-807, gnl|bosTau2|chr29 (33346873-33347666) |
|
19-807, gnl|Hg17|chr11 (63750418-63751181) |
|
19-807, gnl|Mm7|chr19 (6815855-6815105) |
| |
|
904-1006, gnl|bosTau2|chr29 (33348679-33348781) |
|
904-1006, gnl|canFam2|chr18 (55855754-55855624) |
|
904-1006, gnl|dasNov1|scaffold_265578 (3293-3424) |
|
904-1006, gnl|echTel1|scaffold_283541 (8117-7982) |
|
904-1006, gnl|fr1|chrUn (49437496-49437633) |
|
904-1006, gnl|hg17|chr11 (63753279-63753418) |
|
904-1006, gnl|Hg17|chr11 (63753293-63753395) |
|
904-1006, gnl|loxAfr1|scaffold_29620 (7080-7217) |
|
904-1006, gnl|mm7|chr19 (6813631-6813500) |
|
904-1006, gnl|Mm7|chr19 (6813625-6813523) |
|
904-1006, gnl|monDom2|scaffold_1079 (8537-8358) |
|
904-1006, gnl|panTro1|chr9 (64740524-64740662) |
|
904-1006, gnl|rheMac2|chr14 (10199740-10199601) |
|
904-1006, gnl|rn3|chr1 (209825306-209825168) |
|
904-1006, gnl|tetNig1|chr1 (8130412-8130525) |
| |
|
1093-1263, gnl|bosTau2|chr29 (33349290-33349460) |
|
1093-1263, gnl|Hg17|chr11 (63753893-63754064) |
|
1093-1263, gnl|Mm7|chr19 (6813071-6812882) |
|
che (0.272628) |
|
cut (0.169924) |
|
cki (0.165235) |
|
nco (0.161734) |
|
lnt (0.142308) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
jej (0.0989218) |
|
che (0.272628) |
|
cut (0.169924) |
|
cki (0.165235) |
|
nco (0.161734) |
|
lnt (0.142308) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
jej (0.0989218) |
