Non-Coding RNA Search

Ss1.1-Mixn-0026h17.5

Sequence:


               
               TAAGGGCGCCCGTGTTTCGGCGTTCCTGCGGCGAGTCCCTTCCCTTCTCTTCCCTTTTTG
GGGCCTGGGAGTTGCGGGCAGCTCCTTCCCTTCAGACTGGTCGGCGCAACGCTCGAGTGG
CCTGGCAGGGGAGCGGGCTGCGTGCGCGCTGAGGGCACTGTGGAGCGAAGAAGGGCACAC
TGCATGGCTGAAAACCGAGAACCCCGCGGGGCCGTCGAGGCCGAGCTGGACCCGGTGGAA
TACACCCTGCGGAAGCGGCTTCCCCACCGCCTGCCCCGGAGGCCCAATGACATTTATGTC
AACATGAAGACTGACTTTAAGGCCCAGTTGGCCCGCTGCCAGAAGCTGCTGGACGGAGGG
GTAAGGGGTCAGAATGCATGCACTGAGATCTACATTCATGGCTTGGGCCTGGCCATCAAC
CGCGCCATCAACATTGCCCTGCAGCTGCAGGCTGGCAGCTTCGGGTCCTTGCAGGTAGCT
GCCAATACCTCCACCGTGGAGCTTGTCGATGAGCTGGAACCAGAGACTGATACACGAGAG
CCACTGACGCGTATCCGCAACAACTCAGCCATCCACATCCGTGTCTTCAGGGTCACACCT
AAGTAAAGGAGATGAGGCCGGCCCACCTTATCCACCCATCCCATACAGCTTGGCTCAGAA
GTGGCTTTTGTACTGAGTACATGAACCTCCTACCAGGACCATGTAGGATAAAGCCTATCC
CCTCACCATCCAGAGGACTCTGAATTGAGAGGGTGAATATTGTCTTTTGTTGGGCTCAAG
CCGTGAGTCTTCCTGAATCTTTGTGGTCTGTAACCATTGTCCTATACAATAAAAAGCATC
AAGTTGTGTTAGTGCCTGGCCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGGGCGCCCGTGTTTCGGCGTTCCTGCGGCGAGTCCCTTCCCTTCTCTTCCCTTTTTG
GGGCCTGGGAGTTGCGGGCAGCTCCTTCCCTTCAGACTGGTCGGCGCAACGCTCGAGTGG
CCTGGCAGGGGAGCGGGCTGCGTGCGCGCTGAGGGCACTGTGGAGCGAAGAAGGGCACAC
TGCATGGCTGAAAACCGAGAACCCCGCGGGGCCGTCGAGGCCGAGCTGGACCCGGTGGAA
TACACCCTGCGGAAGCGGCTTCCCCACCGCCTGCCCCGGAGGCCCAATGACATTTATGTC
AACATGAAGACTGACTTTAAGGCCCAGTTGGCCCGCTGCCAGAAGCTGCTGGACGGAGGG
GTAAGGGGTCAGAATGCATGCACTGAGATCTACATTCATGGCTTGGGCCTGGCCATCAAC
CGCGCCATCAACATTGCCCTGCAGCTGCAGGCTGGCAGCTTCGGGTCCTTGCAGGTAGCT
GCCAATACCTCCACCGTGGAGCTTGTCGATGAGCTGGAACCAGAGACTGATACACGAGAG
CCACTGACGCGTATCCGCAACAACTCAGCCATCCACATCCGTGTCTTCAGGGTCACACCT
AAGTAAAGGAGATGAGGCCGGCCCACCTTATCCACCCATCCCATACAGCTTGGCTCAGAA
GTGGCTTTTGTACTGAGTACATGAACCTCCTACCAGGACCATGTAGGATAAAGCCTATCC
CCTCACCATCCAGAGGACTCTGAATTGAGAGGGTGAATATTGTCTTTTGTTGGGCTCAAG
CCGTGAGTCTTCCTGAATCTTTGTGGTCTGTAACCATTGTCCTATACAATAAAAAGCATC
AAGTTGTGTTAGTGCCTGGCCACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9BV74_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BV74_HUMAN

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               16-171, gnl|bosTau2|chr25 (32296020-32295866)
               

               
               16-171, gnl|Hg17|chr7 (99948433-99948576)
               


               
               172-864, gnl|bosTau2|chr25 (32295612-32294910)
               

               
               172-864, gnl|Hg17|chr7 (99949093-99949767)
               

               
               172-864, gnl|Mm7|chr5 (136420349-136419697)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-171, gnl|bosTau2|chr25 (32296020-32295866)
               

               
               16-171, gnl|Hg17|chr7 (99948433-99948576)
               


               
               172-864, gnl|bosTau2|chr25 (32295612-32294910)
               

               
               172-864, gnl|Hg17|chr7 (99949093-99949767)
               

               
               172-864, gnl|Mm7|chr5 (136420349-136419697)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               mas (0.84122)
               

               
               ece (0.45861)
               

               
               cov (0.396458)
               

               
               elu (0.385356)
               

               
               nco (0.323468)
               

               
               pty (0.285429)
               

               
               hlv (0.278513)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.84122)
               

               
               ece (0.45861)
               

               
               cov (0.396458)
               

               
               elu (0.385356)
               

               
               nco (0.323468)
               

               
               pty (0.285429)
               

               
               hlv (0.278513)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	16-171, gnl\|bosTau2\|chr25 (32296020-32295866)
	16-171, gnl\|Hg17\|chr7 (99948433-99948576)

	172-864, gnl\|bosTau2\|chr25 (32295612-32294910)
	172-864, gnl\|Hg17\|chr7 (99949093-99949767)
	172-864, gnl\|Mm7\|chr5 (136420349-136419697)

	mas (0.84122)
	ece (0.45861)
	cov (0.396458)
	elu (0.385356)
	nco (0.323468)
	pty (0.285429)
	hlv (0.278513)
	fli (0.202881)
	eje (0.197668)
	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	fty (0.17584)
	ill (0.175593)
	fhi (0.169578)
	cli (0.152812)
	cag (0.151194)
	ova (0.129132)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)