Non-Coding RNA Search

Ss1.1-Mixn-0026h20.5

Sequence:


               
               CAGCTTTTCTCCCTTGTAGAGAAAGAGATTGGCTCCTGTTGCGCCAGGGCGGGGGGGTAA
GGGGACACAACGCAAAAGGGGGTGCGGGGTCCAGAAGGAGTCACAACGAGAGGATCGGGG
TTACCGTCACGCCACACCGAGAAGCGGAGACAACACTTTCACCGGGGTGGGTGCCCCCGG
CGCGGACGCGGGGTCGGGGCGCGCTCTCTTCGTGGGTCTCCAAGCGAAGGCACAGTTCGG
GGGGCCGGGGTGGAGGGCGCGCTCTAGCAGGCCGGACGCACGGGCACCTGCAGGAGGATC
ACTTGTCTGTTTTCTGATGGGTGGCACTTGTTGATGTGCCGCGTGAGGCCGGGCGAGCTG
TAGAAGGTGGCCGGGCAGTACTTGCAGGGGAACACCTGGGCGGCGTGCAGCAGGCGCAGG
TGGCGCTCCTGGGCGCCCTTGCTGGGGAACGTCTCCCCGCACACCGGGCACAGGTGGCAC
TCGGCAGACGCGCTCAGGCCCAGCACGCCGGCCGCCTCGCCATCGCCCGCCGCCTCCTGG
GGCGCCTTCTCGTCGGGCCCAGGGTACAAGGCCAGTAGGTCCTCGGCTGGTGGCGCCGGC
GGCGCGCCCTTGGCCTGCAGAGCCTGGTGGTGGGCCAGCAGGTGCTTGCGCAGATACGCC
TGGCGGCGGAACTTCTTGGCGCAGTGGTGGCACTCGTAGAGCCCGTCCTCGGAACCCGAT
TCGGACACGCCGCCGGGGCTTGGCGTGTCGCGGTCGCTGCCGCCTCCCGTGGCCTCCCGC
GCCTCAGCCCTGGCAGCCGTCTCGGGCTCGGACGCGCGGGCGGCGGCGGGAGCAGGCCTC
GGTTTGTACCAGCGGCGGTGCGAGGCCAGGTTGGCCGGGCAGCTGAAGACCTTGGCGCAT
TCGGGGCAGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTTTTCTCCCTTGTAGAGAAAGAGATTGGCTCCTGTTGCGCCAGGGCGGGGGGGTAA
GGGGACACAACGCAAAAGGGGGTGCGGGGTCCAGAAGGAGTCACAACGAGAGGATCGGGG
TTACCGTCACGCCACACCGAGAAGCGGAGACAACACTTTCACCGGGGTGGGTGCCCCCGG
CGCGGACGCGGGGTCGGGGCGCGCTCTCTTCGTGGGTCTCCAAGCGAAGGCACAGTTCGG
GGGGCCGGGGTGGAGGGCGCGCTCTAGCAGGCCGGACGCACGGGCACCTGCAGGAGGATC
ACTTGTCTGTTTTCTGATGGGTGGCACTTGTTGATGTGCCGCGTGAGGCCGGGCGAGCTG
TAGAAGGTGGCCGGGCAGTACTTGCAGGGGAACACCTGGGCGGCGTGCAGCAGGCGCAGG
TGGCGCTCCTGGGCGCCCTTGCTGGGGAACGTCTCCCCGCACACCGGGCACAGGTGGCAC
TCGGCAGACGCGCTCAGGCCCAGCACGCCGGCCGCCTCGCCATCGCCCGCCGCCTCCTGG
GGCGCCTTCTCGTCGGGCCCAGGGTACAAGGCCAGTAGGTCCTCGGCTGGTGGCGCCGGC
GGCGCGCCCTTGGCCTGCAGAGCCTGGTGGTGGGCCAGCAGGTGCTTGCGCAGATACGCC
TGGCGGCGGAACTTCTTGGCGCAGTGGTGGCACTCGTAGAGCCCGTCCTCGGAACCCGAT
TCGGACACGCCGCCGGGGCTTGGCGTGTCGCGGTCGCTGCCGCCTCCCGTGGCCTCCCGC
GCCTCAGCCCTGGCAGCCGTCTCGGGCTCGGACGCGCGGGCGGCGGCGGGAGCAGGCCTC
GGTTTGTACCAGCGGCGGTGCGAGGCCAGGTTGGCCGGGCAGCTGAAGACCTTGGCGCAT
TCGGGGCAGCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6P0F9_BRARE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6P0F9_BRARE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               275-434, + strand, RNAz p=0.950373

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               275-434, + strand, RNAz p=0.950373

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               277-395, + strand, RNAmicro p=0.993128

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               277-395, + strand, RNAmicro p=0.993128

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               139-912, gnl|bosTau2|chr13 (25070120-25070900)
               

               
               139-912, gnl|Hg17|chr20 (20298589-20297796)
               

               
               139-912, gnl|Mm7|chr2 (145964820-145964022)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-912, gnl|bosTau2|chr13 (25070120-25070900)
               

               
               139-912, gnl|Hg17|chr20 (20298589-20297796)
               

               
               139-912, gnl|Mm7|chr2 (145964820-145964022)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pgl (0.35545)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.35545)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	139-912, gnl\|bosTau2\|chr13 (25070120-25070900)
	139-912, gnl\|Hg17\|chr20 (20298589-20297796)
	139-912, gnl\|Mm7\|chr2 (145964820-145964022)