Non-Coding RNA Search

Ss1.1-Mixn-0026i08.5

Sequence:


               
               TTTATGTGAGATAATAAAAGTATTTGCTCAACCCTTCTGGTTGTACAGCTTTCAAAATGT
AAACAAGTTTGTTATAGAGATGATAGGCAACAGACTGAAGAACCATAATCTTTTCTGTAT
TCTATGCATTCAAGTGTGGACACAAATATGTGGACACATTATCACACCTTTTGAAATGCC
TGTGAATCATTGGTATTGAGCAGCTACATAGCTAACTCATGATTCTGCTTTGAAATGTAA
ATATTTGTAATTAAGTTTGCACATATTTTTTTATTACCCTAGAGGACTCAAGTGTTTTCT
CACGAAGAGGTTTTCAGGTTGCCCCTAACCTTTGTGCAATCTTTTCTGGTTCCCCAAAGT
GTATTTTTCTCTGACTTGAGGGCTGTGCCATAAGACAAATGGGAACATTACCTTTGATTT
TCTTACAGAGAAGTTTAAAACAGGGTTTTAAAAGATGAAATAACACTCCTGATAAGTTGT
AAGTGAGTTGAGTATTAATGTTTCTGCTGTAAATTCTTACCTCCTGAAATATTTTATTCA
TGAAAACAAGGTGAGGAGAAACTCGTTCCATTTTGCCAAGACTTTTTGTGTGTGCTGAGA
TTGCCAATCATGGTTAAACAAAAAGTGTTTTTCTGGAAAGAAGTAATGATCTTTAGTATA
AAAAAAGTATCAAAAATATAACATGTCCCACCACATTTACTTTGAAGCCCATTTTTGGCT
GCTTAGTCCACATGGGGTGGGCACAATAATTGTTTAATATTTTTTTTCTGAGATTTCCTG
TACAGAGTTTTGTAGGTTTACTGCAGGTTAATGCGAGTTGAAGAAGACCATCTTTTGCCA
GTGATATTGCATACCTTTTATTATTATTACAAACCTAAGTGTTTTATATCCTGGATGAAG
CAACAAACCCCTTAGGATTATAGTATTACGTGCCATAAAAATTATGCTTTATTGGTCCCA
TGTTTTGTGCAATTTCAAAGAGATGGCTTTCTATTAAGTGTAACTATGTATATATAATTA
AGAATCGTATTTTCCACAACTGAAATGTGCATTATTTTTTCAAAGTTTTATCATTGCTAT
TTATTTTAACTTTTGTTTCTGAACATTCAATACATGTTTTTTTTGTATGCTTAATTACAT
GTCTGTCTTGTACAATATTCAATTTTTACTGTATATTAACTTCTAGGAAAAGCAAATAAA
TTAAGATTGTTTTTATTTGCTTGATAAAGTAATTGAAAGTGTATTTTTGGTATGAAGCTG
GTTTTCTGTCACAATTGTATCTGCTTAAATTTTAAAATATCTTGTAATAAAATAAAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATGTGAGATAATAAAAGTATTTGCTCAACCCTTCTGGTTGTACAGCTTTCAAAATGT
AAACAAGTTTGTTATAGAGATGATAGGCAACAGACTGAAGAACCATAATCTTTTCTGTAT
TCTATGCATTCAAGTGTGGACACAAATATGTGGACACATTATCACACCTTTTGAAATGCC
TGTGAATCATTGGTATTGAGCAGCTACATAGCTAACTCATGATTCTGCTTTGAAATGTAA
ATATTTGTAATTAAGTTTGCACATATTTTTTTATTACCCTAGAGGACTCAAGTGTTTTCT
CACGAAGAGGTTTTCAGGTTGCCCCTAACCTTTGTGCAATCTTTTCTGGTTCCCCAAAGT
GTATTTTTCTCTGACTTGAGGGCTGTGCCATAAGACAAATGGGAACATTACCTTTGATTT
TCTTACAGAGAAGTTTAAAACAGGGTTTTAAAAGATGAAATAACACTCCTGATAAGTTGT
AAGTGAGTTGAGTATTAATGTTTCTGCTGTAAATTCTTACCTCCTGAAATATTTTATTCA
TGAAAACAAGGTGAGGAGAAACTCGTTCCATTTTGCCAAGACTTTTTGTGTGTGCTGAGA
TTGCCAATCATGGTTAAACAAAAAGTGTTTTTCTGGAAAGAAGTAATGATCTTTAGTATA
AAAAAAGTATCAAAAATATAACATGTCCCACCACATTTACTTTGAAGCCCATTTTTGGCT
GCTTAGTCCACATGGGGTGGGCACAATAATTGTTTAATATTTTTTTTCTGAGATTTCCTG
TACAGAGTTTTGTAGGTTTACTGCAGGTTAATGCGAGTTGAAGAAGACCATCTTTTGCCA
GTGATATTGCATACCTTTTATTATTATTACAAACCTAAGTGTTTTATATCCTGGATGAAG
CAACAAACCCCTTAGGATTATAGTATTACGTGCCATAAAAATTATGCTTTATTGGTCCCA
TGTTTTGTGCAATTTCAAAGAGATGGCTTTCTATTAAGTGTAACTATGTATATATAATTA
AGAATCGTATTTTCCACAACTGAAATGTGCATTATTTTTTCAAAGTTTTATCATTGCTAT
TTATTTTAACTTTTGTTTCTGAACATTCAATACATGTTTTTTTTGTATGCTTAATTACAT
GTCTGTCTTGTACAATATTCAATTTTTACTGTATATTAACTTCTAGGAAAAGCAAATAAA
TTAAGATTGTTTTTATTTGCTTGATAAAGTAATTGAAAGTGTATTTTTGGTATGAAGCTG
GTTTTCTGTCACAATTGTATCTGCTTAAATTTTAAAATATCTTGTAATAAAATAAAAATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               658-816, + strand, RNAz p=0.897475

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               658-816, + strand, RNAz p=0.897475

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015358, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015358, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1320, gnl|bosTau2|chr1 (96358201-96359510)
               

               
               3-1320, gnl|Hg17|chr21 (36669469-36670786)
               

               
               3-1320, gnl|Mm7|chr16 (93941075-93942277)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1320, gnl|bosTau2|chr1 (96358201-96359510)
               

               
               3-1320, gnl|Hg17|chr21 (36669469-36670786)
               

               
               3-1320, gnl|Mm7|chr16 (93941075-93942277)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               eye (0.341006)
               

               
               fco (0.314416)
               

               
               cbl (0.229595)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               fco (0.314416)
               

               
               cbl (0.229595)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)

	3-1320, gnl\|bosTau2\|chr1 (96358201-96359510)
	3-1320, gnl\|Hg17\|chr21 (36669469-36670786)
	3-1320, gnl\|Mm7\|chr16 (93941075-93942277)

	eye (0.341006)
	fco (0.314416)
	cbl (0.229595)
	mcp (0.170648)
	nco (0.161734)
	lin (0.145603)
	hyp (0.142837)
	lyg (0.133103)