Non-Coding RNA Search

Ss1.1-Mixn-0026k01.5

Sequence:


               
               CAACAGAGGCTGTGATCAAAGCTGCTCCCGCCAGTCCATCCACTCCAGGCTCTGAATCTT
CTTACCCGGTCATCCATGCAGCCGGCAAATCTATGAGCACGCAGCCTCCGTTTCCATGGA
CACCACCGCCCGCCAGGGACGCAGAGGGTATTGGATATAGTTCCCTGTGCTCTACAATAA
GATCTCATTGGTGGAGCGCTGCAGCCATGCAGGCGGCGGATGCAGCACGCCCTGGACACA
TCACGCAGAGCAGCACGGCGGGAGGCCCGGAGGGCCCGGGCTGCAGAGGTGGCCCAGGCG
GCCCCAGCAGTCCCCGCGGTGATGGCTGCGTTGCTGCTGATGCAGCCGAGGGAGTTCCGC
CTGTGGCGCCAGGACGGCACCCTTCGGCAGCGGGCAGAGAGTCCGCATCCACAGCCAAAA
GGCCAGGGAGCCGACCACTCGTATTCACCCTAAGCGTACCTTTTCCGTCTTCCTTGGAGG
CAGAGATCGCCCGTGGCTCCCTGGCCCCAGATGCTGAACCCCACCGAGGGGCGGCTGGGA
AGAAGCTCTCAGTGAGCGCCAGCTTCCTGGCCGTCCACTGGAGAGCTGAAGATTCCCGTC
TCCTCCGAATTTCCATCCTAAACTTCCTTGACCAGCTTTCCCTGGCGATTCGCACCATGC
AGCGCTTTGGGCCCCCTGTTATCCGCTAAGCCAGGACTGGGGAGACAGGCCAGGGTCTGA
CCTTGTGTCTCTTCCAGGACAGTGCAGCCCGCATGGGGCATTGATTCCTGTAGGAGTTGC
CAGTTTATTATGGGGGCCTAATCTTTTGCCTGTATTGGCCCTTGGGCGCTCAGGATCCAC
TTGCTTTGTTTGATGCTTAAATATTTCTTAACCACAGAAAATAAAACTGAGCTTCCATGC
TTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACAGAGGCTGTGATCAAAGCTGCTCCCGCCAGTCCATCCACTCCAGGCTCTGAATCTT
CTTACCCGGTCATCCATGCAGCCGGCAAATCTATGAGCACGCAGCCTCCGTTTCCATGGA
CACCACCGCCCGCCAGGGACGCAGAGGGTATTGGATATAGTTCCCTGTGCTCTACAATAA
GATCTCATTGGTGGAGCGCTGCAGCCATGCAGGCGGCGGATGCAGCACGCCCTGGACACA
TCACGCAGAGCAGCACGGCGGGAGGCCCGGAGGGCCCGGGCTGCAGAGGTGGCCCAGGCG
GCCCCAGCAGTCCCCGCGGTGATGGCTGCGTTGCTGCTGATGCAGCCGAGGGAGTTCCGC
CTGTGGCGCCAGGACGGCACCCTTCGGCAGCGGGCAGAGAGTCCGCATCCACAGCCAAAA
GGCCAGGGAGCCGACCACTCGTATTCACCCTAAGCGTACCTTTTCCGTCTTCCTTGGAGG
CAGAGATCGCCCGTGGCTCCCTGGCCCCAGATGCTGAACCCCACCGAGGGGCGGCTGGGA
AGAAGCTCTCAGTGAGCGCCAGCTTCCTGGCCGTCCACTGGAGAGCTGAAGATTCCCGTC
TCCTCCGAATTTCCATCCTAAACTTCCTTGACCAGCTTTCCCTGGCGATTCGCACCATGC
AGCGCTTTGGGCCCCCTGTTATCCGCTAAGCCAGGACTGGGGAGACAGGCCAGGGTCTGA
CCTTGTGTCTCTTCCAGGACAGTGCAGCCCGCATGGGGCATTGATTCCTGTAGGAGTTGC
CAGTTTATTATGGGGGCCTAATCTTTTGCCTGTATTGGCCCTTGGGCGCTCAGGATCCAC
TTGCTTTGTTTGATGCTTAAATATTTCTTAACCACAGAAAATAAAACTGAGCTTCCATGC
TTAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38383094|gb|AAH62330.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38383094|gb|AAH62330.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               578-893, gnl|bosTau2|chrX (14697495-14697809)
               

               
               578-893, gnl|Hg17|chrX (153270098-153269822)
               

               
               578-893, gnl|Mm7|chrX (69739144-69738836)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               578-893, gnl|bosTau2|chrX (14697495-14697809)
               

               
               578-893, gnl|Hg17|chrX (153270098-153269822)
               

               
               578-893, gnl|Mm7|chrX (69739144-69738836)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hyp (0.285673)
               

               
               pla (0.267344)
               

               
               ecc (0.23007)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               pla (0.267344)
               

               
               ecc (0.23007)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

	578-893, gnl\|bosTau2\|chrX (14697495-14697809)
	578-893, gnl\|Hg17\|chrX (153270098-153269822)
	578-893, gnl\|Mm7\|chrX (69739144-69738836)

	hyp (0.285673)
	pla (0.267344)
	ecc (0.23007)
	nmm (0.132802)
	eje (0.0988338)