Non-Coding RNA Search

Ss1.1-Mixn-0026k17.5

Sequence:


               
               CCTGGAGCTGCCCTTCCAGGGAGCCCACCGCCTGATGTGGGCCAAAATTGGGCCGGTGGG
AGCTGTGGTCGCCTTCGCCATCCTAATTGCCATCGTCTGCTACATCACCCAGACACGCAG
AAAAAAGAACGTGACGGAGAGCCCCAGCTTCTCAGCAGGGGACACCCCTCCTGTCCTGTT
CAGCAGCGACTTCCGCATCTCCGGGGCGCCGGAGAAATATGAGAGTGAGAGGCGCCTGGG
ATCTGAGAGGCGGCTGCTGGGTCTTCGGGGGGAGCCCCCAGAGCTGGACCTGAGCTATTC
TCACTCGGACCTGGGAAAGCGACCCACCAAGGACAGCTACACCCTGACGGAGGAGCTGGC
CGAGTATGCTGAAATCCGGGTCAAGTGAGGGAGCTGGGGGCAGCCCGTGTGGCCACCCCC
CCTCAGGACCCTCACTGGCCCCCACTGGCTGCGGGCTCCCTCCCCCCCCAAAAGTAGTGG
GGGCCGGGGCAGGAAAGGGATGGGGCAGGTGACAGTGAGGTCCTGGGGGCCTGGCTCCCC
CTCCTTCCCTGCTGCCCCCGCCCTGCCAACACCCACCTTTGCATGTGGCTCCCCTCTAAC
CTCCTTTAACCTCATCTGTCTGGAGGGGAGCTCCGTCTGTCCGTGTTATTTATTGCTACC
CTCTGCCTGGTCTCCTGCCCCTGCCCCCACCTGGCCCCCGGGGGCCTGTATGGGGGGTGG
GGCACGAAATAAATGCCCTCAAGCCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGAGCTGCCCTTCCAGGGAGCCCACCGCCTGATGTGGGCCAAAATTGGGCCGGTGGG
AGCTGTGGTCGCCTTCGCCATCCTAATTGCCATCGTCTGCTACATCACCCAGACACGCAG
AAAAAAGAACGTGACGGAGAGCCCCAGCTTCTCAGCAGGGGACACCCCTCCTGTCCTGTT
CAGCAGCGACTTCCGCATCTCCGGGGCGCCGGAGAAATATGAGAGTGAGAGGCGCCTGGG
ATCTGAGAGGCGGCTGCTGGGTCTTCGGGGGGAGCCCCCAGAGCTGGACCTGAGCTATTC
TCACTCGGACCTGGGAAAGCGACCCACCAAGGACAGCTACACCCTGACGGAGGAGCTGGC
CGAGTATGCTGAAATCCGGGTCAAGTGAGGGAGCTGGGGGCAGCCCGTGTGGCCACCCCC
CCTCAGGACCCTCACTGGCCCCCACTGGCTGCGGGCTCCCTCCCCCCCCAAAAGTAGTGG
GGGCCGGGGCAGGAAAGGGATGGGGCAGGTGACAGTGAGGTCCTGGGGGCCTGGCTCCCC
CTCCTTCCCTGCTGCCCCCGCCCTGCCAACACCCACCTTTGCATGTGGCTCCCCTCTAAC
CTCCTTTAACCTCATCTGTCTGGAGGGGAGCTCCGTCTGTCCGTGTTATTTATTGCTACC
CTCTGCCTGGTCTCCTGCCCCTGCCCCCACCTGGCCCCCGGGGGCCTGTATGGGGGGTGG
GGCACGAAATAAATGCCCTCAAGCCAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1403055|emb|CAA67055.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1403055|emb|CAA67055.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               418-559, - strand, RNAz p=0.999338

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               418-559, - strand, RNAz p=0.999338

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               222-559, gnl|bosTau2|chr18 (39756812-39756473)
               

               
               222-559, gnl|Hg17|chr19 (40496031-40496405)
               

               
               222-559, gnl|Mm7|chr7 (27839480-27839105)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               222-559, gnl|bosTau2|chr18 (39756812-39756473)
               

               
               222-559, gnl|Hg17|chr19 (40496031-40496405)
               

               
               222-559, gnl|Mm7|chr7 (27839480-27839105)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.42851)
               

               
               fhi (0.339155)
               

               
               cbr (0.127975)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               fhi (0.339155)
               

               
               cbr (0.127975)

	222-559, gnl\|bosTau2\|chr18 (39756812-39756473)
	222-559, gnl\|Hg17\|chr19 (40496031-40496405)
	222-559, gnl\|Mm7\|chr7 (27839480-27839105)