Non-Coding RNA Search

Ss1.1-Mixn-0026k20.5

Sequence:


               
               GGAAGTTGGGACCTCTTCCGGGAGGCTTATGCTGCCATTGAGACTTATCACCAGACCCCA
CCACCCACCTTCTCCTTCCGAGAAAGAGTGACTCACAAGAGCCTTGTCTACCTCTGGTTC
CTGTGCAGTTCTGTGGCACTTGCCCTGGGTGCCCTAACTGTATGGCATGCTGTTCTCATC
AGTCGAGGTGAGACGAGCATCGAAAGGCACATCAACAAGAAGGAGCGACGTCGGCTCCAG
GCCAAGGGCAGAGTTTTTAGGAATCATTACAACTACGGCTGCTTGGACAACTGGAAGGTA
TTCCTGGGTGTGGACACAGGAAGGCACTGGCTTACTCGGGTGCTGTTACCTTCCAGTCAC
CTGCCCCACGGGAATGGAATGAGCTGGGATCCCCCTCCCTGGGTGACTGCTCACTCGGCC
TCCGTGATGGCAGTGTGAGCCGAAGCGTGCCAGCCACAACCTGAGCACCACCCTGCTTCC
TGCATTGTCTCAAGGGCCTCCAAGGATAGCTTCTTGGAATCCTTGAGCAAAAAGAGCCAG
TGGGCCTACCGTAGGGTACCATGCAGGGGCAGCTCACAGACCAGTCTTCTGACCGCTGCA
GAAGCAAGGCATGATGTGGAAACATCCTAGGACTGATGTCCCTTTACTCAGGCAAACAGA
AGTTCCAGCCCCAGACTGGAGATTAGGCAGCTAGCAACCTTGCCGGGTACCGACCCCGAC
CTCCTCCAGGGTACAGCACTGGGGTTGGCCACCACCTCTTCGACTTGCCATCCGAGAACA
CACCTGAATGGTAGAGCTGAGTTCCTGGCTCCTCAACAGGGCAAAGAAACAGGCCTACTG
CTGAGGTCACTGCCACTTCTCATGTGCTGCTGAAGGGAGCAAAAATAAAGGTATTTGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGTTGGGACCTCTTCCGGGAGGCTTATGCTGCCATTGAGACTTATCACCAGACCCCA
CCACCCACCTTCTCCTTCCGAGAAAGAGTGACTCACAAGAGCCTTGTCTACCTCTGGTTC
CTGTGCAGTTCTGTGGCACTTGCCCTGGGTGCCCTAACTGTATGGCATGCTGTTCTCATC
AGTCGAGGTGAGACGAGCATCGAAAGGCACATCAACAAGAAGGAGCGACGTCGGCTCCAG
GCCAAGGGCAGAGTTTTTAGGAATCATTACAACTACGGCTGCTTGGACAACTGGAAGGTA
TTCCTGGGTGTGGACACAGGAAGGCACTGGCTTACTCGGGTGCTGTTACCTTCCAGTCAC
CTGCCCCACGGGAATGGAATGAGCTGGGATCCCCCTCCCTGGGTGACTGCTCACTCGGCC
TCCGTGATGGCAGTGTGAGCCGAAGCGTGCCAGCCACAACCTGAGCACCACCCTGCTTCC
TGCATTGTCTCAAGGGCCTCCAAGGATAGCTTCTTGGAATCCTTGAGCAAAAAGAGCCAG
TGGGCCTACCGTAGGGTACCATGCAGGGGCAGCTCACAGACCAGTCTTCTGACCGCTGCA
GAAGCAAGGCATGATGTGGAAACATCCTAGGACTGATGTCCCTTTACTCAGGCAAACAGA
AGTTCCAGCCCCAGACTGGAGATTAGGCAGCTAGCAACCTTGCCGGGTACCGACCCCGAC
CTCCTCCAGGGTACAGCACTGGGGTTGGCCACCACCTCTTCGACTTGCCATCCGAGAACA
CACCTGAATGGTAGAGCTGAGTTCCTGGCTCCTCAACAGGGCAAAGAAACAGGCCTACTG
CTGAGGTCACTGCCACTTCTCATGTGCTGCTGAAGGGAGCAAAAATAAAGGTATTTGATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61877587|ref|XP_582480.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61877587|ref|XP_582480.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               340-451, - strand, RNAz p=0.90229
               

               
               609-764, - strand, RNAz p=0.821283

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               340-451, - strand, RNAz p=0.90229
               

               
               609-764, - strand, RNAz p=0.821283

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr26 (11169302-11168397)
               

               
               1-900, gnl|Hg17|chr10 (99203369-99207107)
               

               
               1-900, gnl|Mm7|chr19 (41833531-41837931)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr26 (11169302-11168397)
               

               
               1-900, gnl|Hg17|chr10 (99203369-99207107)
               

               
               1-900, gnl|Mm7|chr19 (41833531-41837931)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               nms (0.213858)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               clu (0.119646)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               clu (0.119646)

	340-451, - strand, RNAz p=0.90229
	609-764, - strand, RNAz p=0.821283

	1-900, gnl\|bosTau2\|chr26 (11169302-11168397)
	1-900, gnl\|Hg17\|chr10 (99203369-99207107)
	1-900, gnl\|Mm7\|chr19 (41833531-41837931)

	nms (0.213858)
	cag (0.151194)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	nmm (0.132802)
	clu (0.119646)