Non-Coding RNA Search

Ss1.1-Mixn-0026k23.5

Sequence:


               
               GGCTGGAGGGCGGGCGCCGGCCCGTCGGGGGCCCGGAGGGGGGCTCGGAGCGGGCAAAGG
GGCGGCTCCGGCGGGCAGACTCGGAGCGGGTGGCCAGCTGTGCGGCGGCGCTGCAACATC
TGGTTTCCTCCGCCCGGACCCCAGGCCGGCCTCTGGAGCAGGCAGAGCCTCCTGCAGACT
GTCCCCTGACACCAGCCCAGCTCGCCTCACTGTGTAGCCATGAGAGCTGCCTCCCTCTTC
CTGCTGTTCCTGCCTGCAGGCCTGCTGGCTCAGGGCCAGTATGACCTGGACCCGCTGCCT
CCGTTCCCAGACCACGTCCAGTATACCCACTATAGCGACCAGATCGACAACCCGGACTAC
TATGATTATCAAGAGGTGACGCCTCGGCCCCCAGAGGAGCAGTTCCAGTTCCAGTCCCAG
CAGCAAGTCCAACAGGAAGTTATCCCAGCCCCCACCTTAGAACCAGGCCATGTTGAGACG
GAGCCCACGGAGCCTGGGCCTCTGGACTGCCGCGAGGAGCAGTACCCGTGTACCCGCCTC
TATTCCATACACAAGCCTTGCAAGCAGTGTCTCAATGAGGTCTGCTTCTACAGCCTCCGC
CGTGTGTATGTTGTCAACAAGGAGATCTGTGTCCGCACCGTCTGCGCCCACGAGGAGCTC
CTGCGAGCTGACCTATGTCGTGACAAGTTCTCCAAGTGCGGCGTGATGGCCAGTAGTGGC
CTGTGCCAGTCTGTGGCGGCCTCCTGCGCCAGGAGCTGCGGGGGCTGCTAGGGTGGAGCT
GGCGCCCCAGCCCTGGGCCCTCCGCAGATCTGGGGCCCCCAGGCTCTGCCTGACCTGGTG
CTTTCTTCCCCAGCCCCCCTCGCCTGTCATTCTGTAAAAAGTTAGAGGACTGTGGCCTTG
GGGGTGGCCTCGGGCCCCTTCCCCAATCTGTGGCCGCCCCTGGAGCACAAACAGGGCTCC
CCAAGGCCCAGGCCTTGCCCCCAGGCGGGGGATACCCCAGGCCTCTCTATGGGCCCCTCA
CATGCCTTCCCCCTTCCCCCTCCCCTCCCCCTCCGAGGGCAGTCCCCGCCCCCAGGGTAG
GCTATGACCCTCCCCCAGCTGGTCTGCTTGGAGTTCCTACAGCCCTGGGCATAGTCCACC
TTTGTTTTATACAAAATTAAAAACAGGTTTTTACAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGGAGGGCGGGCGCCGGCCCGTCGGGGGCCCGGAGGGGGGCTCGGAGCGGGCAAAGG
GGCGGCTCCGGCGGGCAGACTCGGAGCGGGTGGCCAGCTGTGCGGCGGCGCTGCAACATC
TGGTTTCCTCCGCCCGGACCCCAGGCCGGCCTCTGGAGCAGGCAGAGCCTCCTGCAGACT
GTCCCCTGACACCAGCCCAGCTCGCCTCACTGTGTAGCCATGAGAGCTGCCTCCCTCTTC
CTGCTGTTCCTGCCTGCAGGCCTGCTGGCTCAGGGCCAGTATGACCTGGACCCGCTGCCT
CCGTTCCCAGACCACGTCCAGTATACCCACTATAGCGACCAGATCGACAACCCGGACTAC
TATGATTATCAAGAGGTGACGCCTCGGCCCCCAGAGGAGCAGTTCCAGTTCCAGTCCCAG
CAGCAAGTCCAACAGGAAGTTATCCCAGCCCCCACCTTAGAACCAGGCCATGTTGAGACG
GAGCCCACGGAGCCTGGGCCTCTGGACTGCCGCGAGGAGCAGTACCCGTGTACCCGCCTC
TATTCCATACACAAGCCTTGCAAGCAGTGTCTCAATGAGGTCTGCTTCTACAGCCTCCGC
CGTGTGTATGTTGTCAACAAGGAGATCTGTGTCCGCACCGTCTGCGCCCACGAGGAGCTC
CTGCGAGCTGACCTATGTCGTGACAAGTTCTCCAAGTGCGGCGTGATGGCCAGTAGTGGC
CTGTGCCAGTCTGTGGCGGCCTCCTGCGCCAGGAGCTGCGGGGGCTGCTAGGGTGGAGCT
GGCGCCCCAGCCCTGGGCCCTCCGCAGATCTGGGGCCCCCAGGCTCTGCCTGACCTGGTG
CTTTCTTCCCCAGCCCCCCTCGCCTGTCATTCTGTAAAAAGTTAGAGGACTGTGGCCTTG
GGGGTGGCCTCGGGCCCCTTCCCCAATCTGTGGCCGCCCCTGGAGCACAAACAGGGCTCC
CCAAGGCCCAGGCCTTGCCCCCAGGCGGGGGATACCCCAGGCCTCTCTATGGGCCCCTCA
CATGCCTTCCCCCTTCCCCCTCCCCTCCCCCTCCGAGGGCAGTCCCCGCCCCCAGGGTAG
GCTATGACCCTCCCCCAGCTGGTCTGCTTGGAGTTCCTACAGCCCTGGGCATAGTCCACC
TTTGTTTTATACAAAATTAAAAACAGGTTTTTACAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               MFAP2_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               MFAP2_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               928-1174, - strand, RNAz p=0.993649

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               928-1174, - strand, RNAz p=0.993649

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               226-353, gnl|bosTau2|chr2 (86126482-86126610)
               

               
               226-353, gnl|canFam2|chr2 (84117800-84117346)
               

               
               226-353, gnl|echTel1|scaffold_126529 (1251-910)
               

               
               226-353, gnl|hg17|chr1 (17048902-17049359)
               

               
               226-353, gnl|Hg17|chr1 (17049032-17048903)
               

               
               226-353, gnl|mm7|chr4 (140392315-140391985)
               

               
               226-353, gnl|Mm7|chr4 (140392189-140392314)
               

               
               226-353, gnl|panTro1|chr1 (17219658-17220115)
               

               
               226-353, gnl|rheMac2|chr1 (19603691-19604146)
               

               
               226-353, gnl|rn3|chr5 (159882506-159882199)
               


               
               666-897, gnl|bosTau2|chr2 (86120662-86120876)
               

               
               666-897, gnl|Hg17|chr1 (17046826-17046545)
               

               
               666-897, gnl|Mm7|chr4 (140393916-140394174)
               


               
               928-1178, gnl|bosTau2|chr2 (86120869-86121114)
               

               
               928-1178, gnl|Hg17|chr1 (17046552-17046303)
               

               
               928-1178, gnl|Mm7|chr4 (140394145-140394414)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               226-353, gnl|bosTau2|chr2 (86126482-86126610)
               

               
               226-353, gnl|canFam2|chr2 (84117800-84117346)
               

               
               226-353, gnl|echTel1|scaffold_126529 (1251-910)
               

               
               226-353, gnl|hg17|chr1 (17048902-17049359)
               

               
               226-353, gnl|Hg17|chr1 (17049032-17048903)
               

               
               226-353, gnl|mm7|chr4 (140392315-140391985)
               

               
               226-353, gnl|Mm7|chr4 (140392189-140392314)
               

               
               226-353, gnl|panTro1|chr1 (17219658-17220115)
               

               
               226-353, gnl|rheMac2|chr1 (19603691-19604146)
               

               
               226-353, gnl|rn3|chr5 (159882506-159882199)
               


               
               666-897, gnl|bosTau2|chr2 (86120662-86120876)
               

               
               666-897, gnl|Hg17|chr1 (17046826-17046545)
               

               
               666-897, gnl|Mm7|chr4 (140393916-140394174)
               


               
               928-1178, gnl|bosTau2|chr2 (86120869-86121114)
               

               
               928-1178, gnl|Hg17|chr1 (17046552-17046303)
               

               
               928-1178, gnl|Mm7|chr4 (140394145-140394414)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               eru (0.720288)
               

               
               eje (0.494169)
               

               
               ese (0.379507)
               

               
               nep (0.36785)
               

               
               eye (0.341006)
               

               
               pla (0.267344)
               

               
               eep (0.245128)
               

               
               cty (0.20816)
               

               
               nlu (0.191681)
               

               
               nje (0.16592)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.720288)
               

               
               eje (0.494169)
               

               
               ese (0.379507)
               

               
               nep (0.36785)
               

               
               eye (0.341006)
               

               
               pla (0.267344)
               

               
               eep (0.245128)
               

               
               cty (0.20816)
               

               
               nlu (0.191681)
               

               
               nje (0.16592)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	226-353, gnl\|bosTau2\|chr2 (86126482-86126610)
	226-353, gnl\|canFam2\|chr2 (84117800-84117346)
	226-353, gnl\|echTel1\|scaffold_126529 (1251-910)
	226-353, gnl\|hg17\|chr1 (17048902-17049359)
	226-353, gnl\|Hg17\|chr1 (17049032-17048903)
	226-353, gnl\|mm7\|chr4 (140392315-140391985)
	226-353, gnl\|Mm7\|chr4 (140392189-140392314)
	226-353, gnl\|panTro1\|chr1 (17219658-17220115)
	226-353, gnl\|rheMac2\|chr1 (19603691-19604146)
	226-353, gnl\|rn3\|chr5 (159882506-159882199)

	666-897, gnl\|bosTau2\|chr2 (86120662-86120876)
	666-897, gnl\|Hg17\|chr1 (17046826-17046545)
	666-897, gnl\|Mm7\|chr4 (140393916-140394174)

	928-1178, gnl\|bosTau2\|chr2 (86120869-86121114)
	928-1178, gnl\|Hg17\|chr1 (17046552-17046303)
	928-1178, gnl\|Mm7\|chr4 (140394145-140394414)

	eru (0.720288)
	eje (0.494169)
	ese (0.379507)
	nep (0.36785)
	eye (0.341006)
	pla (0.267344)
	eep (0.245128)
	cty (0.20816)
	nlu (0.191681)
	nje (0.16592)
	nca (0.136874)
	ute (0.132784)
	med (0.116252)
	jej (0.0989218)