Non-Coding RNA Search

Ss1.1-Mixn-0026l15.5

Sequence:


               
               AACAAACTTTCTTAGAACTCACTAATACAGACTAGCTGGACCCAGCAATTTGGATTCCTG
CAGATCAGAGACTTTATTTCCCTTTATCGCCTTTTCTGTCATCCTCCCTGGAGTAACTCG
GTGACCAGCCTGTGCAGGGTGACAGATGGGTCTCATTTGCAGGAAAGGCTACTGATATGG
ATCATCGTCACCCAGATTCTCTCATTTGGTACCAGCATTTATGTAGGTTATCAGAGAAGA
ATTCTAAGGATTTCTAAACCTTAACTTTCCATAAGGGTTTTAGCCAGTATTTTATTAGAA
TATGACTAATGAAAGTGACAGATTTTTAAGTTTCTCAAATAGTCCTCATAGTAACTTTTT
ACAAGAAGAGGAATGAACTAAAAAAAAAGAAGGTGAACACTTTGCTAAGTCAAACAAATG
GCTTGATTATTGTAAACAACATAGAGGCACTTTTGTTTAAATAGAGAAGTTTTTTGTGTG
TTTTGCTTTGCTTTGTCTTGTCAGAGTCAAGAACAAAAGTTGTTGCCAGGTGATTATGCT
GGTGTACTATACTTGTCAGCCTGAAATAGAGGCACTGTTGCAACTTCGGCTTTCATCCTA
TGCCTCATCAATGAAGAAAGGGGGCAAAGTTTATAAAGCTGCCACAATTGTATTTTAATT
TTGAGGTGTGGTAATTTTGGATATGTCAGACTTTCTATCTTCTTTCAGTAAACAGAATTG
TGATCATGCAGATACAATTTTAGTGTTTGGGTTTAGTTTTTTATATATACTTTTTTGCCG
ACTGACTTAACAATATTGCTGTCATGTGGAAATTTCAAGCACTTTTGCACATTTTGTTCA
CCGTTTGTTGAGAAAACATGGCTTAACTCGGTTTTTTAAATATTTTTTCTCCGCCTTTAC
ATTTCCTGTCTAGTTTTATCTCTGTGCGTCAGTGACCTATCTTAAAACAACACACCAAAA
TAGCTGAAAATAAACTGTGTTCATTTTTTTATGATCAACTAACATGCATATGAGTTGTGT
TTAATCAAATGGATTTTAATGTATATAAGCACTCTATATGCTTCATTACCGGTGCAGGTA
GGTCACTGACTACTCCTTTTCATCCATACTGCACCCTTGTAAAGCCTTTGAAGACACTGA
AAAAACCTGTCTGAGCTGTTCCCTGCATCAATCTGTACATCTTTTGGTTGTCAAGTGTTT
ATGCACGGTCATGTCACTTAGAAGCTGATACTGATTTGTCAGTCCACCTATATTTAAAAT
GTGCAAGAAAAATATGAAATACTTTGCTGTAGCAAGTTTTTATGTAACAAAAATATATCA
TGTTAATAAATCTAAAACATCATTTGTGTAAAATATTTTAATTAGTTTTTTTGTATTTCA
TTTAGACCCAAGAACATGCTGATCATGTATTCTGTATGTATGCTATAGATGCTATGGTAC
CTTTGTTGTATATTATTGTAAAATTATTACATAAAAATTTTAATAAATCATGGGGGTGAC
AATTTGATGATTACATTTTTAGTTTTCAGCTAAACTAAAAGGATTTCTATGAATTCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAAACTTTCTTAGAACTCACTAATACAGACTAGCTGGACCCAGCAATTTGGATTCCTG
CAGATCAGAGACTTTATTTCCCTTTATCGCCTTTTCTGTCATCCTCCCTGGAGTAACTCG
GTGACCAGCCTGTGCAGGGTGACAGATGGGTCTCATTTGCAGGAAAGGCTACTGATATGG
ATCATCGTCACCCAGATTCTCTCATTTGGTACCAGCATTTATGTAGGTTATCAGAGAAGA
ATTCTAAGGATTTCTAAACCTTAACTTTCCATAAGGGTTTTAGCCAGTATTTTATTAGAA
TATGACTAATGAAAGTGACAGATTTTTAAGTTTCTCAAATAGTCCTCATAGTAACTTTTT
ACAAGAAGAGGAATGAACTAAAAAAAAAGAAGGTGAACACTTTGCTAAGTCAAACAAATG
GCTTGATTATTGTAAACAACATAGAGGCACTTTTGTTTAAATAGAGAAGTTTTTTGTGTG
TTTTGCTTTGCTTTGTCTTGTCAGAGTCAAGAACAAAAGTTGTTGCCAGGTGATTATGCT
GGTGTACTATACTTGTCAGCCTGAAATAGAGGCACTGTTGCAACTTCGGCTTTCATCCTA
TGCCTCATCAATGAAGAAAGGGGGCAAAGTTTATAAAGCTGCCACAATTGTATTTTAATT
TTGAGGTGTGGTAATTTTGGATATGTCAGACTTTCTATCTTCTTTCAGTAAACAGAATTG
TGATCATGCAGATACAATTTTAGTGTTTGGGTTTAGTTTTTTATATATACTTTTTTGCCG
ACTGACTTAACAATATTGCTGTCATGTGGAAATTTCAAGCACTTTTGCACATTTTGTTCA
CCGTTTGTTGAGAAAACATGGCTTAACTCGGTTTTTTAAATATTTTTTCTCCGCCTTTAC
ATTTCCTGTCTAGTTTTATCTCTGTGCGTCAGTGACCTATCTTAAAACAACACACCAAAA
TAGCTGAAAATAAACTGTGTTCATTTTTTTATGATCAACTAACATGCATATGAGTTGTGT
TTAATCAAATGGATTTTAATGTATATAAGCACTCTATATGCTTCATTACCGGTGCAGGTA
GGTCACTGACTACTCCTTTTCATCCATACTGCACCCTTGTAAAGCCTTTGAAGACACTGA
AAAAACCTGTCTGAGCTGTTCCCTGCATCAATCTGTACATCTTTTGGTTGTCAAGTGTTT
ATGCACGGTCATGTCACTTAGAAGCTGATACTGATTTGTCAGTCCACCTATATTTAAAAT
GTGCAAGAAAAATATGAAATACTTTGCTGTAGCAAGTTTTTATGTAACAAAAATATATCA
TGTTAATAAATCTAAAACATCATTTGTGTAAAATATTTTAATTAGTTTTTTTGTATTTCA
TTTAGACCCAAGAACATGCTGATCATGTATTCTGTATGTATGCTATAGATGCTATGGTAC
CTTTGTTGTATATTATTGTAAAATTATTACATAAAAATTTTAATAAATCATGGGGGTGAC
AATTTGATGATTACATTTTTAGTTTTCAGCTAAACTAAAAGGATTTCTATGAATTCTAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               5-1560, gnl|bosTau2|chr3 (46053124-46054646)
               

               
               5-1560, gnl|Hg17|chr1 (84413560-84415130)
               

               
               5-1560, gnl|Mm7|chr3 (146630628-146629149)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1560, gnl|bosTau2|chr3 (46053124-46054646)
               

               
               5-1560, gnl|Hg17|chr1 (84413560-84415130)
               

               
               5-1560, gnl|Mm7|chr3 (146630628-146629149)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               ecc (0.345105)
               

               
               vin (0.332557)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.345105)
               

               
               vin (0.332557)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	5-1560, gnl\|bosTau2\|chr3 (46053124-46054646)
	5-1560, gnl\|Hg17\|chr1 (84413560-84415130)
	5-1560, gnl\|Mm7\|chr3 (146630628-146629149)

	ecc (0.345105)
	vin (0.332557)
	spl (0.286369)
	sug (0.254582)
	ece (0.229305)
	gul (0.177588)
	isp (0.150376)
	hyp (0.142837)
	ste (0.135208)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	pgl (0.118483)
	ebs (0.118301)
	spc (0.113366)