Non-Coding RNA Search

Ss1.1-Mixn-0026m15.5

Sequence:


               
               CGAGCGCGCAGGCAGAGGACGGCGGAGTCTTAGCTTCGGTCTCGCCTCCTGCCCGCTCCC
CGCTCACCCTCGGGCCCCCGGAGCGGGGGACTCCGCATGGAGCGCGAGTAGCTTGAGGAG
TGGGCAGAAACCCCTCCTGATGTATTAGTTCCCAGGTGGAGCTGCATGTGATATATGTTG
GGGAAAGGAGGAAAACGGAAGTTTGATGAGCATGAAGATGGGCTGGAAGGCAAAATCGTG
TCCCCCTCCGACGGTCCGTCCAAGGTGTCTTACACCTTACAGCGCCAGACTATCTTCAAC
ATTTCCCTTATGAAACTCTACAACCACAGGCCCCTCACAGAGCCCAGCTTGCAAAAGACT
GTGCTCATCAACAACATGCTGCGGCGGATCCAGGAGGAGCTGAAGCAGGAAGGCAGCCTG
AGGCCCGCGTTCCCCGCCTCCTCACCGCCTGACCCGAGGGGCGCCGGCTTGGGCGCTGGC
TCCCGGGAGGCACCGCCTGCCTTCAGCGCCCCCGCGGCCCCGCCCGCGCCCCCCTGCGAG
CTGGGCGGCCCCGCGCCCCTAGAGGCCTGCCTCACCCCTGCCTCGCTGCTTGAGGACGAC
GATGACACTTTTTGCACTTCCCCCGCCGCGCCGCCCGTGGCCCCCGCCCGACTCGCGCCT
CCTGCCCTCCCGCCGGAAAAGGACAGCTTCTCCTCCGCCCTGGACGAGATCGAGGAGCTC
TGTCCCACACCTACCTCCGCGGAGGCCGCGACGGACGGCTCGAAAGGGGGCTCCGGTGGG
GCCGGCGCTCAGAGACCCGAGGGGGACTCCCGGCCCGACGACCCCAAACTGATGGACTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGCGCGCAGGCAGAGGACGGCGGAGTCTTAGCTTCGGTCTCGCCTCCTGCCCGCTCCC
CGCTCACCCTCGGGCCCCCGGAGCGGGGGACTCCGCATGGAGCGCGAGTAGCTTGAGGAG
TGGGCAGAAACCCCTCCTGATGTATTAGTTCCCAGGTGGAGCTGCATGTGATATATGTTG
GGGAAAGGAGGAAAACGGAAGTTTGATGAGCATGAAGATGGGCTGGAAGGCAAAATCGTG
TCCCCCTCCGACGGTCCGTCCAAGGTGTCTTACACCTTACAGCGCCAGACTATCTTCAAC
ATTTCCCTTATGAAACTCTACAACCACAGGCCCCTCACAGAGCCCAGCTTGCAAAAGACT
GTGCTCATCAACAACATGCTGCGGCGGATCCAGGAGGAGCTGAAGCAGGAAGGCAGCCTG
AGGCCCGCGTTCCCCGCCTCCTCACCGCCTGACCCGAGGGGCGCCGGCTTGGGCGCTGGC
TCCCGGGAGGCACCGCCTGCCTTCAGCGCCCCCGCGGCCCCGCCCGCGCCCCCCTGCGAG
CTGGGCGGCCCCGCGCCCCTAGAGGCCTGCCTCACCCCTGCCTCGCTGCTTGAGGACGAC
GATGACACTTTTTGCACTTCCCCCGCCGCGCCGCCCGTGGCCCCCGCCCGACTCGCGCCT
CCTGCCCTCCCGCCGGAAAAGGACAGCTTCTCCTCCGCCCTGGACGAGATCGAGGAGCTC
TGTCCCACACCTACCTCCGCGGAGGCCGCGACGGACGGCTCGAAAGGGGGCTCCGGTGGG
GCCGGCGCTCAGAGACCCGAGGGGGACTCCCGGCCCGACGACCCCAAACTGATGGACTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55605611|ref|XP_515728.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55605611|ref|XP_515728.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               209-368, - strand, RNAz p=0.884938
               

               
               646-753, - strand, RNAz p=0.885925

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               209-368, - strand, RNAz p=0.884938
               

               
               646-753, - strand, RNAz p=0.885925

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               170-840, gnl|bosTau2|chr11 (45506093-45505414)
               

               
               170-840, gnl|Hg17|chr2 (64775661-64774985)
               

               
               170-840, gnl|Mm7|chr11 (20599810-20600471)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-840, gnl|bosTau2|chr11 (45506093-45505414)
               

               
               170-840, gnl|Hg17|chr2 (64775661-64774985)
               

               
               170-840, gnl|Mm7|chr11 (20599810-20600471)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.401016)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)

	209-368, - strand, RNAz p=0.884938
	646-753, - strand, RNAz p=0.885925

	170-840, gnl\|bosTau2\|chr11 (45506093-45505414)
	170-840, gnl\|Hg17\|chr2 (64775661-64774985)
	170-840, gnl\|Mm7\|chr11 (20599810-20600471)