Ss1.1-Mixn-0026n18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGCCGCGAGTTCGAGTACCTGATGAAGAAGCGCTCGGTGACCATCGGGCGCAACTCGT CGCAGGGCTCGGTGGACGTGAGCATGGGCCACTCGAGCTTCATCTCTCGGCGCCACCTCG AGATCTTCACGCCCCCGGGCGGCGGCGGCCATGGCGGGGCGGCCCCGGAGCCGTCGGCGC AGCCCGGGCCCGACGCGGGCGGCGACTTCTACCTGCGCTGCCTCGGCAAGAACGGCGTGT TCGTGGACGGCGTGTTCCAGAGGCGCGGGGCGCCGCCGCTGCAGCTGCCGCGCGTGTGCA CATTCAGGTTCCCGAGCACAAACATCAAGATCACGTTCACTGCCCTGTCCAGTGAGAAGA GGGAGACGCAGGAGGCGCCCGAGTCCCCGGTGAAGCCGGTGCAGGCCCACATCTCGCCGC TGACCATCAACATTCCAGACACCATGGCCCACCTCATCAGCCCGCTCCCCTCCCCGACAG GAACCATCAGTGCTGCAAACTCCTGTCCATCCAGCCCCCGGGGAGCAGGGTCCTCGGGGT ACAAAATGGGCCGTGTGATACCATCTGACCTCAATTTAATGGCTGACAACTCACAGCCAG AAAACGAGAAGGAAGCTTCAGGTGGAGACAGCCCGAAGGATGATTCGAAGCCACCTTATT CCTATGCACAGTTAATCGTTCAAGCAATCACGATGGCTCCTGACAAGCAGCTCACCCTGA ACGGCATTTACACGCACATCACCAAAAACTACCCCTACTACAGGACCGCGGACAAGGGCT GGCAGAATTCAATTCGCCACAATCTCTCTCTGAATCGTTATTTCATCAAAGTACCACGTT CCCAGGAAGAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGCCGCGAGTTCGAGTACCTGATGAAGAAGCGCTCGGTGACCATCGGGCGCAACTCGT CGCAGGGCTCGGTGGACGTGAGCATGGGCCACTCGAGCTTCATCTCTCGGCGCCACCTCG AGATCTTCACGCCCCCGGGCGGCGGCGGCCATGGCGGGGCGGCCCCGGAGCCGTCGGCGC AGCCCGGGCCCGACGCGGGCGGCGACTTCTACCTGCGCTGCCTCGGCAAGAACGGCGTGT TCGTGGACGGCGTGTTCCAGAGGCGCGGGGCGCCGCCGCTGCAGCTGCCGCGCGTGTGCA CATTCAGGTTCCCGAGCACAAACATCAAGATCACGTTCACTGCCCTGTCCAGTGAGAAGA GGGAGACGCAGGAGGCGCCCGAGTCCCCGGTGAAGCCGGTGCAGGCCCACATCTCGCCGC TGACCATCAACATTCCAGACACCATGGCCCACCTCATCAGCCCGCTCCCCTCCCCGACAG GAACCATCAGTGCTGCAAACTCCTGTCCATCCAGCCCCCGGGGAGCAGGGTCCTCGGGGT ACAAAATGGGCCGTGTGATACCATCTGACCTCAATTTAATGGCTGACAACTCACAGCCAG AAAACGAGAAGGAAGCTTCAGGTGGAGACAGCCCGAAGGATGATTCGAAGCCACCTTATT CCTATGCACAGTTAATCGTTCAAGCAATCACGATGGCTCCTGACAAGCAGCTCACCCTGA ACGGCATTTACACGCACATCACCAAAAACTACCCCTACTACAGGACCGCGGACAAGGGCT GGCAGAATTCAATTCGCCACAATCTCTCTCTGAATCGTTATTTCATCAAAGTACCACGTT CCCAGGAAGAAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-125, gnl|bosTau2|chr25 (37532174-37532050) | |
| 1-125, gnl|Hg17|chr7 (4495509-4495633) | |
| 1-125, gnl|Mm7|chr5 (141379509-141379633) | |
| 296-490, gnl|bosTau2|chr19 (47424519-47424325) | |
| 296-490, gnl|Hg17|chr17 (78114519-78114713) | |
| 296-490, gnl|Mm7|chr11 (121394467-121394661) | |
| 632-785, gnl|bosTau2|chr25 (37483852-37483699) | |
| 632-785, gnl|canFam2|chr6 (15886275-15886109) | |
| 632-785, gnl|canFam2|chrUn (11843854-11843975) | |
| 632-785, gnl|danRer3|chr2 (11873489-11873368) | |
| 632-785, gnl|danRer3|chr3 (36986422-36986586) | |
| 632-785, gnl|dasNov1|scaffold_178778 (4052-4171) | |
| 632-785, gnl|dasNov1|scaffold_178778 (4051-4195) | |
| 632-785, gnl|echTel1|scaffold_212594 (3310-3189) | |
| 632-785, gnl|echTel1|scaffold_302966 (4393-4551) | |
| 632-785, gnl|fr1|chrUn (126991031-126990910) | |
| 632-785, gnl|fr1|chrUn (88265442-88265279) | |
| 632-785, gnl|galGal2|chr14 (6142864-6143025) | |
| 632-785, gnl|galGal2|chr18 (3256241-3256120) | |
| 632-785, gnl|hg17|chr17 (78122887-78123008) | |
| 632-785, gnl|hg17|chr7 (4568099-4568306) | |
| 632-785, gnl|Hg17|chr7 (4568102-4568255) | |
| 632-785, gnl|loxAfr1|scaffold_12357 (24174-24295) | |
| 632-785, gnl|loxAfr1|scaffold_12357 (24166-24325) | |
| 632-785, gnl|mm7|chr11 (121399787-121399908) | |
| 632-785, gnl|mm7|chr5 (141427938-141428105) | |
| 632-785, gnl|Mm7|chr5 (141427933-141428086) | |
| 632-785, gnl|monDom2|scaffold_17 (4487155-4487357) | |
| 632-785, gnl|monDom2|scaffold_88 (746175-746296) | |
| 632-785, gnl|oryCun1|scaffold_168957 (3719-3840) | |
| 632-785, gnl|oryCun1|scaffold_168957 (3711-3879) | |
| 632-785, gnl|panTro1|chr19 (81908182-81908303) | |
| 632-785, gnl|panTro1|chr6 (4943134-4943342) | |
| 632-785, gnl|rheMac2|chr16 (78053731-78053852) | |
| 632-785, gnl|rheMac2|chr3 (42753422-42753629) | |
| 632-785, gnl|rn3|chr10 (110547121-110547242) | |
| 632-785, gnl|rn3|chr12 (12551070-12550903) | |
| 632-785, gnl|tetNig1|chr3 (14464340-14464141) | |
| 632-785, gnl|tetNig1|chrUn_random (36293422-36293543) | |
| 632-785, gnl|xenTro1|scaffold_1433 (33193-33314) | |
| 632-785, gnl|xenTro1|scaffold_1433 (33185-33371) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-125, gnl|bosTau2|chr25 (37532174-37532050) | |
| 1-125, gnl|Hg17|chr7 (4495509-4495633) | |
| 1-125, gnl|Mm7|chr5 (141379509-141379633) | |
| 296-490, gnl|bosTau2|chr19 (47424519-47424325) | |
| 296-490, gnl|Hg17|chr17 (78114519-78114713) | |
| 296-490, gnl|Mm7|chr11 (121394467-121394661) | |
| 632-785, gnl|bosTau2|chr25 (37483852-37483699) | |
| 632-785, gnl|canFam2|chr6 (15886275-15886109) | |
| 632-785, gnl|canFam2|chrUn (11843854-11843975) | |
| 632-785, gnl|danRer3|chr2 (11873489-11873368) | |
| 632-785, gnl|danRer3|chr3 (36986422-36986586) | |
| 632-785, gnl|dasNov1|scaffold_178778 (4052-4171) | |
| 632-785, gnl|dasNov1|scaffold_178778 (4051-4195) | |
| 632-785, gnl|echTel1|scaffold_212594 (3310-3189) | |
| 632-785, gnl|echTel1|scaffold_302966 (4393-4551) | |
| 632-785, gnl|fr1|chrUn (126991031-126990910) | |
| 632-785, gnl|fr1|chrUn (88265442-88265279) | |
| 632-785, gnl|galGal2|chr14 (6142864-6143025) | |
| 632-785, gnl|galGal2|chr18 (3256241-3256120) | |
| 632-785, gnl|hg17|chr17 (78122887-78123008) | |
| 632-785, gnl|hg17|chr7 (4568099-4568306) | |
| 632-785, gnl|Hg17|chr7 (4568102-4568255) | |
| 632-785, gnl|loxAfr1|scaffold_12357 (24174-24295) | |
| 632-785, gnl|loxAfr1|scaffold_12357 (24166-24325) | |
| 632-785, gnl|mm7|chr11 (121399787-121399908) | |
| 632-785, gnl|mm7|chr5 (141427938-141428105) | |
| 632-785, gnl|Mm7|chr5 (141427933-141428086) | |
| 632-785, gnl|monDom2|scaffold_17 (4487155-4487357) | |
| 632-785, gnl|monDom2|scaffold_88 (746175-746296) | |
| 632-785, gnl|oryCun1|scaffold_168957 (3719-3840) | |
| 632-785, gnl|oryCun1|scaffold_168957 (3711-3879) | |
| 632-785, gnl|panTro1|chr19 (81908182-81908303) | |
| 632-785, gnl|panTro1|chr6 (4943134-4943342) | |
| 632-785, gnl|rheMac2|chr16 (78053731-78053852) | |
| 632-785, gnl|rheMac2|chr3 (42753422-42753629) | |
| 632-785, gnl|rn3|chr10 (110547121-110547242) | |
| 632-785, gnl|rn3|chr12 (12551070-12550903) | |
| 632-785, gnl|tetNig1|chr3 (14464340-14464141) | |
| 632-785, gnl|tetNig1|chrUn_random (36293422-36293543) | |
| 632-785, gnl|xenTro1|scaffold_1433 (33193-33314) | |
| 632-785, gnl|xenTro1|scaffold_1433 (33185-33371) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) | |
| cty (0.10408) |