Non-Coding RNA Search

Ss1.1-Mixn-0026o08.5

Sequence:


               
               GCCCGGCGCCCGGAGCCCGCCTCGGCTGCCGGGCAGTGCCCGGAGTGGACCGTCGTCTTC
GACCTGTCGACCGTGGAACCGGCAGAACGCCCAAGCCAGGTTCGCCTGGAGCTGCGCTTC
GCGGCTGAGGAGGCGTCGGCGGGGATGGCGGGCAGCTGGGAGCTGAGCGTGGCGCGCGCG
GGCTCTGGTCCGGTGCTGCTCCGCCAGGCGGTGACCGCCCTGGGAACGCCGGTGCGCGCT
GAGCTGCTGGGCGCCGCCTGGGCCCGCAACGCCTCGGCGCCGCGCAGCCTCCGTCTAACA
CTGGCGCTGCGTCCTCGGGCCCCCACCGTTTGCGCGCGCCTGACCGAGGCCTCGCTGCTG
CTGGTGACCCTCGACCCGCGCCTGTGCCACCCTCTGGCCCGGCCGCGGCGCGAGGCCGAG
CCCGCAGTGGGCGGTGGCTCGGGGGGCGCGTGTCGCACGCGGCGGCTCTATGTGAGCTTC
CGCGAGGTGGGCTGGCACCGCTGGGTCATCGCGCCTCGCGGCTTCCTAGCCAACTACTGC
CAGGGAAAGTGCGCGCTGCCCGCCGCGCTGTCGGAACCGGGTGGGACGCCCGCGCTCAAC
CACGCGGTGCTGCGCGCGCTCATGCACTCGGCCGCCCCCGGCGCCGCCGGCCTGCCCTGC
TGCGTACCCGCGCGTCTATCGCCTATCTCTGTGCTCTTCTTTGATAACAATGACAACGTG
GTACTACGGCACTACGAGGACATGGTGGTGGATGAGTGCGGCTGCCGCTGATGGGGGCAG
GTGGGCGGTGGCAACAATAAACACTACGTGGTCCGCTCAAAAAAAAAATTGAGCCGTGCC
AGGGTGGTTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGGCGCCCGGAGCCCGCCTCGGCTGCCGGGCAGTGCCCGGAGTGGACCGTCGTCTTC
GACCTGTCGACCGTGGAACCGGCAGAACGCCCAAGCCAGGTTCGCCTGGAGCTGCGCTTC
GCGGCTGAGGAGGCGTCGGCGGGGATGGCGGGCAGCTGGGAGCTGAGCGTGGCGCGCGCG
GGCTCTGGTCCGGTGCTGCTCCGCCAGGCGGTGACCGCCCTGGGAACGCCGGTGCGCGCT
GAGCTGCTGGGCGCCGCCTGGGCCCGCAACGCCTCGGCGCCGCGCAGCCTCCGTCTAACA
CTGGCGCTGCGTCCTCGGGCCCCCACCGTTTGCGCGCGCCTGACCGAGGCCTCGCTGCTG
CTGGTGACCCTCGACCCGCGCCTGTGCCACCCTCTGGCCCGGCCGCGGCGCGAGGCCGAG
CCCGCAGTGGGCGGTGGCTCGGGGGGCGCGTGTCGCACGCGGCGGCTCTATGTGAGCTTC
CGCGAGGTGGGCTGGCACCGCTGGGTCATCGCGCCTCGCGGCTTCCTAGCCAACTACTGC
CAGGGAAAGTGCGCGCTGCCCGCCGCGCTGTCGGAACCGGGTGGGACGCCCGCGCTCAAC
CACGCGGTGCTGCGCGCGCTCATGCACTCGGCCGCCCCCGGCGCCGCCGGCCTGCCCTGC
TGCGTACCCGCGCGTCTATCGCCTATCTCTGTGCTCTTCTTTGATAACAATGACAACGTG
GTACTACGGCACTACGAGGACATGGTGGTGGATGAGTGCGGCTGCCGCTGATGGGGGCAG
GTGGGCGGTGGCAACAATAAACACTACGTGGTCCGCTCAAAAAAAAAATTGAGCCGTGCC
AGGGTGGTTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2739356|gb|AAB94786.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2739356|gb|AAB94786.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               422-541, - strand, RNAz p=0.914045

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               422-541, - strand, RNAz p=0.914045

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-819, gnl|bosTau2|chr7 (2315953-2315121)
               

               
               1-819, gnl|Hg17|chr19 (18841191-18840353)
               

               
               1-819, gnl|Mm7|chr8 (68785913-68786683)
               


               
               400-778, gnl|bosTau2|chr11 (61732339-61732702)
               

               
               400-778, gnl|Hg17|chr2 (20792459-20792815)
               

               
               400-778, gnl|Mm7|chr12 (8254207-8253844)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-819, gnl|bosTau2|chr7 (2315953-2315121)
               

               
               1-819, gnl|Hg17|chr19 (18841191-18840353)
               

               
               1-819, gnl|Mm7|chr8 (68785913-68786683)
               


               
               400-778, gnl|bosTau2|chr11 (61732339-61732702)
               

               
               400-778, gnl|Hg17|chr2 (20792459-20792815)
               

               
               400-778, gnl|Mm7|chr12 (8254207-8253844)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.593354)
               

               
               fhi (0.339155)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               fhi (0.339155)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)

	1-819, gnl\|bosTau2\|chr7 (2315953-2315121)
	1-819, gnl\|Hg17\|chr19 (18841191-18840353)
	1-819, gnl\|Mm7\|chr8 (68785913-68786683)

	400-778, gnl\|bosTau2\|chr11 (61732339-61732702)
	400-778, gnl\|Hg17\|chr2 (20792459-20792815)
	400-778, gnl\|Mm7\|chr12 (8254207-8253844)