Non-Coding RNA Search

Ss1.1-Mixn-0026o20.5

Sequence:


               
               TCCCCCTCNGGCTTCACGAGCACTTTCCGGCTTCACCGGCCCACCCCGAAGCCGCGGCAA
AGGCCCACGCTGCCGCCGCCCCAGCCTCCCAGCGCCAGCTTCGCGGCCTCCAGCCCGCAG
TCCGCGGAGCATCCTGCACTGGACGGCGTGGCCCCCGGAGAGAGCATGTCCACAGAGCTC
GTCCACTTTGACGTCCCCGCCATCCACGTCGAGCTGGGGCCGCCGCTGCGCCCGGGTCCC
CTGGAGCACGGACGGCGACACGCGGGGGCCGAGAAGAGGGACTCGGAGGAGGAATCTGAG
AGCACGGCCCTCTGACGGGCGCCGCGGGCTCCCGGCCGTCACTGCCAAGGCCAGGTTGGG
GTCTGCAGGTGGCAGTGGGGCCGAGGGCGTCCCTTCCCTCCAGGCAGTGACTTTGGCCTT
TTGTCTGATCTTTGCCTTTTGACTTTGTGCCTATTTCGATGCACTTCCAGCCTCCACGCC
CATTGGCGGCCCTCGCCACGCACGGGCCGGTGTGTCGGAAACGACCCGCACCGGTGGGGT
GCGGAGGGGCCGGTGGCCCGCAGCCCCGGGGCGCCCGCCTGCCCGCGCCGCCTGAGGGCA
GAGGGGGGCCGGCCAGCGTGAACCAAAACCCTTGGGCGTGAAAGGAAACGGCTGAAAACA
AGTTACGTCTCACTTCCCAACAGTCGAAATGCTCCCCACCCTGGACGGACGCCCCCTTTC
CTCTCCCGTGTTTCTGACTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCCTCNGGCTTCACGAGCACTTTCCGGCTTCACCGGCCCACCCCGAAGCCGCGGCAA
AGGCCCACGCTGCCGCCGCCCCAGCCTCCCAGCGCCAGCTTCGCGGCCTCCAGCCCGCAG
TCCGCGGAGCATCCTGCACTGGACGGCGTGGCCCCCGGAGAGAGCATGTCCACAGAGCTC
GTCCACTTTGACGTCCCCGCCATCCACGTCGAGCTGGGGCCGCCGCTGCGCCCGGGTCCC
CTGGAGCACGGACGGCGACACGCGGGGGCCGAGAAGAGGGACTCGGAGGAGGAATCTGAG
AGCACGGCCCTCTGACGGGCGCCGCGGGCTCCCGGCCGTCACTGCCAAGGCCAGGTTGGG
GTCTGCAGGTGGCAGTGGGGCCGAGGGCGTCCCTTCCCTCCAGGCAGTGACTTTGGCCTT
TTGTCTGATCTTTGCCTTTTGACTTTGTGCCTATTTCGATGCACTTCCAGCCTCCACGCC
CATTGGCGGCCCTCGCCACGCACGGGCCGGTGTGTCGGAAACGACCCGCACCGGTGGGGT
GCGGAGGGGCCGGTGGCCCGCAGCCCCGGGGCGCCCGCCTGCCCGCGCCGCCTGAGGGCA
GAGGGGGGCCGGCCAGCGTGAACCAAAACCCTTGGGCGTGAAAGGAAACGGCTGAAAACA
AGTTACGTCTCACTTCCCAACAGTCGAAATGCTCCCCACCCTGGACGGACGCCCCCTTTC
CTCTCCCGTGTTTCTGACTTTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5EB79_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5EB79_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.571274

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.571274

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-175, gnl|bosTau2|chr19 (25070520-25070694)
               

               
               1-175, gnl|canFam2|chr5 (39951736-39951999)
               

               
               1-175, gnl|danRer3|chr3 (14875340-14875614)
               

               
               1-175, gnl|dasNov1|scaffold_3914 (34834-34540)
               

               
               1-175, gnl|echTel1|scaffold_236084 (8136-7836)
               

               
               1-175, gnl|fr1|chrUn (179905596-179905327)
               

               
               1-175, gnl|galGal2|chr18 (2063204-2062932)
               

               
               1-175, gnl|hg17|chr17 (12828707-12829004)
               

               
               1-175, gnl|Hg17|chr17 (12828776-12828950)
               

               
               1-175, gnl|mm7|chr11 (65089874-65089578)
               

               
               1-175, gnl|Mm7|chr11 (65089803-65089629)
               

               
               1-175, gnl|monDom2|scaffold_88 (3911527-3911248)
               

               
               1-175, gnl|oryCun1|scaffold_195452 (436-188)
               

               
               1-175, gnl|panTro1|chr19_random (25537720-25537429)
               

               
               1-175, gnl|rheMac2|chr16 (12730033-12730330)
               

               
               1-175, gnl|rn3|chr10 (51333678-51333381)
               

               
               1-175, gnl|tetNig1|chr3 (10741957-10742223)
               

               
               1-175, gnl|xenTro1|scaffold_270 (1061646-1061361)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-175, gnl|bosTau2|chr19 (25070520-25070694)
               

               
               1-175, gnl|canFam2|chr5 (39951736-39951999)
               

               
               1-175, gnl|danRer3|chr3 (14875340-14875614)
               

               
               1-175, gnl|dasNov1|scaffold_3914 (34834-34540)
               

               
               1-175, gnl|echTel1|scaffold_236084 (8136-7836)
               

               
               1-175, gnl|fr1|chrUn (179905596-179905327)
               

               
               1-175, gnl|galGal2|chr18 (2063204-2062932)
               

               
               1-175, gnl|hg17|chr17 (12828707-12829004)
               

               
               1-175, gnl|Hg17|chr17 (12828776-12828950)
               

               
               1-175, gnl|mm7|chr11 (65089874-65089578)
               

               
               1-175, gnl|Mm7|chr11 (65089803-65089629)
               

               
               1-175, gnl|monDom2|scaffold_88 (3911527-3911248)
               

               
               1-175, gnl|oryCun1|scaffold_195452 (436-188)
               

               
               1-175, gnl|panTro1|chr19_random (25537720-25537429)
               

               
               1-175, gnl|rheMac2|chr16 (12730033-12730330)
               

               
               1-175, gnl|rn3|chr10 (51333678-51333381)
               

               
               1-175, gnl|tetNig1|chr3 (10741957-10742223)
               

               
               1-175, gnl|xenTro1|scaffold_270 (1061646-1061361)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.127975)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.127975)

	1-175, gnl\|bosTau2\|chr19 (25070520-25070694)
	1-175, gnl\|canFam2\|chr5 (39951736-39951999)
	1-175, gnl\|danRer3\|chr3 (14875340-14875614)
	1-175, gnl\|dasNov1\|scaffold_3914 (34834-34540)
	1-175, gnl\|echTel1\|scaffold_236084 (8136-7836)
	1-175, gnl\|fr1\|chrUn (179905596-179905327)
	1-175, gnl\|galGal2\|chr18 (2063204-2062932)
	1-175, gnl\|hg17\|chr17 (12828707-12829004)
	1-175, gnl\|Hg17\|chr17 (12828776-12828950)
	1-175, gnl\|mm7\|chr11 (65089874-65089578)
	1-175, gnl\|Mm7\|chr11 (65089803-65089629)
	1-175, gnl\|monDom2\|scaffold_88 (3911527-3911248)
	1-175, gnl\|oryCun1\|scaffold_195452 (436-188)
	1-175, gnl\|panTro1\|chr19_random (25537720-25537429)
	1-175, gnl\|rheMac2\|chr16 (12730033-12730330)
	1-175, gnl\|rn3\|chr10 (51333678-51333381)
	1-175, gnl\|tetNig1\|chr3 (10741957-10742223)
	1-175, gnl\|xenTro1\|scaffold_270 (1061646-1061361)