Non-Coding RNA Search

Ss1.1-Mixn-0027a07.5

Sequence:


               
               TGCGCGCCTCTTCGGAATCACGAGGTTTTTTCAGAAGCACTTCTTTTTATTTCTTCACAC
AAAGTGGATACAAGATAAGCAGGTTCCTAGGGTAACGCAGGCAGGGCCGTGGTGCGCTCT
GGGTTCCTTTCTCAGAAACCCATTCCTGGCTTCTGACATCTTTTTCCAGGCCCCCCAGTG
AAGCAAGAACAGGTCTCCTGCAAGATGTGCCGCATGGAATCTTTCTTCCGCAAGAATGGG
GCCTTCGCACTGCTTGACCCCCGGGGACCTGGCCCTCTGACCCTGGGCCAGGCAGTGGGC
CTAGGGGAGGGCAGAAGAAATCGCACACCTCCAAGTGGGGTGAAGCTGCGGTGTACGTCT
GTTTGGCTCTCCCAAGCCGTGACGCTGCGTTCTGGGCCTTTTTGAAACTACCTCTGAACT
GCATGCAGGCTGCCGTCTTTATCCTTCAAGAACCCTCATCTCTTTAACCATCCCTGTGAG
GATTGGAAGGGGCTGGGAAGGGCGAGCGATGCTGTCCAGACGCAGGCTCCTCAGCGCCAG
GGGGCCACAGTAACTGCTGGAAGTTCTGGGTGTTCCTGGCTCCGAGGGCTCGCAGCCGCC
CGGTTCTCTCCCGGTGCATTTGTTCCAGCTGCTCCCGCAGGGCCCGCCGCAGCCCCGCCG
TGTCCTCCTGGGGGGGCGCCAAGCGCTGAGCCCCCCGCCTCCCAGCCCCCGGGCTCGCTG
CGGCCAGCAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGCGCCTCTTCGGAATCACGAGGTTTTTTCAGAAGCACTTCTTTTTATTTCTTCACAC
AAAGTGGATACAAGATAAGCAGGTTCCTAGGGTAACGCAGGCAGGGCCGTGGTGCGCTCT
GGGTTCCTTTCTCAGAAACCCATTCCTGGCTTCTGACATCTTTTTCCAGGCCCCCCAGTG
AAGCAAGAACAGGTCTCCTGCAAGATGTGCCGCATGGAATCTTTCTTCCGCAAGAATGGG
GCCTTCGCACTGCTTGACCCCCGGGGACCTGGCCCTCTGACCCTGGGCCAGGCAGTGGGC
CTAGGGGAGGGCAGAAGAAATCGCACACCTCCAAGTGGGGTGAAGCTGCGGTGTACGTCT
GTTTGGCTCTCCCAAGCCGTGACGCTGCGTTCTGGGCCTTTTTGAAACTACCTCTGAACT
GCATGCAGGCTGCCGTCTTTATCCTTCAAGAACCCTCATCTCTTTAACCATCCCTGTGAG
GATTGGAAGGGGCTGGGAAGGGCGAGCGATGCTGTCCAGACGCAGGCTCCTCAGCGCCAG
GGGGCCACAGTAACTGCTGGAAGTTCTGGGTGTTCCTGGCTCCGAGGGCTCGCAGCCGCC
CGGTTCTCTCCCGGTGCATTTGTTCCAGCTGCTCCCGCAGGGCCCGCCGCAGCCCCGCCG
TGTCCTCCTGGGGGGGCGCCAAGCGCTGAGCCCCCCGCCTCCCAGCCCCCGGGCTCGCTG
CGGCCAGCAGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               263-364, - strand, RNAz p=0.903104

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-364, - strand, RNAz p=0.903104

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               28-579, gnl|bosTau2|chr4 (50473441-50472883)
               

               
               28-579, gnl|canFam2|chr14 (10741684-10741317)
               

               
               28-579, gnl|dasNov1|scaffold_1198 (19741-19363)
               

               
               28-579, gnl|hg17|chr7 (128102515-128102899)
               

               
               28-579, gnl|Hg17|chr7 (128102528-128103087)
               

               
               28-579, gnl|loxAfr1|scaffold_188049 (904-521)
               

               
               28-579, gnl|mm7|chr6 (29405295-29405744)
               

               
               28-579, gnl|Mm7|chr6 (29405308-29405930)
               

               
               28-579, gnl|monDom2|scaffold_22 (15707743-15707341)
               

               
               28-579, gnl|oryCun1|scaffold_195011 (7972-7603)
               

               
               28-579, gnl|panTro1|chr6 (130494237-130494621)
               

               
               28-579, gnl|rheMac2|chr3 (166198580-166198964)
               

               
               28-579, gnl|rn3|chr4 (56612030-56612455)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-579, gnl|bosTau2|chr4 (50473441-50472883)
               

               
               28-579, gnl|canFam2|chr14 (10741684-10741317)
               

               
               28-579, gnl|dasNov1|scaffold_1198 (19741-19363)
               

               
               28-579, gnl|hg17|chr7 (128102515-128102899)
               

               
               28-579, gnl|Hg17|chr7 (128102528-128103087)
               

               
               28-579, gnl|loxAfr1|scaffold_188049 (904-521)
               

               
               28-579, gnl|mm7|chr6 (29405295-29405744)
               

               
               28-579, gnl|Mm7|chr6 (29405308-29405930)
               

               
               28-579, gnl|monDom2|scaffold_22 (15707743-15707341)
               

               
               28-579, gnl|oryCun1|scaffold_195011 (7972-7603)
               

               
               28-579, gnl|panTro1|chr6 (130494237-130494621)
               

               
               28-579, gnl|rheMac2|chr3 (166198580-166198964)
               

               
               28-579, gnl|rn3|chr4 (56612030-56612455)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cki (0.165235)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               pla (0.133672)

	28-579, gnl\|bosTau2\|chr4 (50473441-50472883)
	28-579, gnl\|canFam2\|chr14 (10741684-10741317)
	28-579, gnl\|dasNov1\|scaffold_1198 (19741-19363)
	28-579, gnl\|hg17\|chr7 (128102515-128102899)
	28-579, gnl\|Hg17\|chr7 (128102528-128103087)
	28-579, gnl\|loxAfr1\|scaffold_188049 (904-521)
	28-579, gnl\|mm7\|chr6 (29405295-29405744)
	28-579, gnl\|Mm7\|chr6 (29405308-29405930)
	28-579, gnl\|monDom2\|scaffold_22 (15707743-15707341)
	28-579, gnl\|oryCun1\|scaffold_195011 (7972-7603)
	28-579, gnl\|panTro1\|chr6 (130494237-130494621)
	28-579, gnl\|rheMac2\|chr3 (166198580-166198964)
	28-579, gnl\|rn3\|chr4 (56612030-56612455)