Ss1.1-Mixn-0027b04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCAGGCTTCATTGGGACTGCCCTAACCCAAATGCTGAAGGCCAAAGGCCACAAAGTGA CGTTGGTCTCCCGAAAGCCAGGGCTAGATCGGATCACGTGGGATGAGCTGGCTTCCTCGG GGCTGCCCCCCTGCGATGCCGCTGTCAACCTGGCAGGAGAAAACATCCTCAACCCCCTCC GAAGGTGGAATGAAGCTTTCCAAAAAGAGGTTATCAGCAGCCGCTTGGAGACCACGCACA TGATGGCTACAGCCATTGCCAAGGCCCCACAACCTCCCCAGGCCTGGGTCTTAGTCACAG GCGTAGCTTACTACCAGCCCAGCCTGACTGCGGAGTACGATGAGGACAGCCCAGGAGGGG ATTTTGACTTTTTCTCCAACCTCGTCACCAAATGGGAAGCTGCAGCCAGGCTTCCTGGAG ATTCAACACGCCAAGTGGTGGTGCGTTCCGGGGTTGTGCTGGGCCGAGGGGGTGGCGCCA TCGGTCACATGCTGCTGCCCTTCCGCCTGGGCCTGGGGGGCCCCATTGGCTCAGGCCACC AGTTCTTCCCCTGGATTCACATTGGGGACTTAGCTGGAATCCTGGTCCATGCCCTTGAAG CAAGCCACGTGCAGGGGGTCCTGAACGGAGTGGCTCCAGCCTCTGCCACTACGAATGCTG AGTTTGCCCGGGCCTTGGGTGCAGCCCTGGGCCGCCCAGCCTTCATCCCTTTCCCCAGCA CTGTGGTACGAGCTATCTTTGGGCAGGAACGAGCCATCATGCTGCTGGAGGGCCAGAAGG TAGTCCCGCGGCGGACGCTGGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCAGGCTTCATTGGGACTGCCCTAACCCAAATGCTGAAGGCCAAAGGCCACAAAGTGA CGTTGGTCTCCCGAAAGCCAGGGCTAGATCGGATCACGTGGGATGAGCTGGCTTCCTCGG GGCTGCCCCCCTGCGATGCCGCTGTCAACCTGGCAGGAGAAAACATCCTCAACCCCCTCC GAAGGTGGAATGAAGCTTTCCAAAAAGAGGTTATCAGCAGCCGCTTGGAGACCACGCACA TGATGGCTACAGCCATTGCCAAGGCCCCACAACCTCCCCAGGCCTGGGTCTTAGTCACAG GCGTAGCTTACTACCAGCCCAGCCTGACTGCGGAGTACGATGAGGACAGCCCAGGAGGGG ATTTTGACTTTTTCTCCAACCTCGTCACCAAATGGGAAGCTGCAGCCAGGCTTCCTGGAG ATTCAACACGCCAAGTGGTGGTGCGTTCCGGGGTTGTGCTGGGCCGAGGGGGTGGCGCCA TCGGTCACATGCTGCTGCCCTTCCGCCTGGGCCTGGGGGGCCCCATTGGCTCAGGCCACC AGTTCTTCCCCTGGATTCACATTGGGGACTTAGCTGGAATCCTGGTCCATGCCCTTGAAG CAAGCCACGTGCAGGGGGTCCTGAACGGAGTGGCTCCAGCCTCTGCCACTACGAATGCTG AGTTTGCCCGGGCCTTGGGTGCAGCCCTGGGCCGCCCAGCCTTCATCCCTTTCCCCAGCA CTGTGGTACGAGCTATCTTTGGGCAGGAACGAGCCATCATGCTGCTGGAGGGCCAGAAGG TAGTCCCGCGGCGGACGCTGGCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 490-649, - strand, RNAz p=0.652514 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 490-649, - strand, RNAz p=0.652514 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_015299, - |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 1-102, gnl|bosTau2|chr10 (11905316-11905215) | |
| 1-102, gnl|canFam2|chr8 (7421073-7421210) | |
| 1-102, gnl|danRer3|chr2 (34585247-34585384) | |
| 1-102, gnl|dasNov1|scaffold_68109 (6880-7017) | |
| 1-102, gnl|echTel1|scaffold_316052 (41906-41769) | |
| 1-102, gnl|hg17|chr14 (23981387-23981526) | |
| 1-102, gnl|Hg17|chr14 (23981492-23981391) | |
| 1-102, gnl|loxAfr1|scaffold_9350 (71656-71793) | |
| 1-102, gnl|mm7|chr14 (50767162-50767299) | |
| 1-102, gnl|Mm7|chr14 (50767267-50767166) | |
| 1-102, gnl|monDom2|scaffold_12 (25216670-25216535) | |
| 1-102, gnl|oryCun1|scaffold_179870 (10356-10493) | |
| 1-102, gnl|panTro1|chr15 (22886477-22886616) | |
| 1-102, gnl|rheMac2|chr7 (87340422-87340561) | |
| 1-102, gnl|rn3|chr15 (34060691-34060828) | |
| 1-102, gnl|xenTro1|scaffold_339 (898519-898632) | |
| 177-306, gnl|bosTau2|chr10 (11904656-11904526) | |
| 177-306, gnl|canFam2|chr8 (7420418-7420575) | |
| 177-306, gnl|danRer3|chr2 (34581549-34581734) | |
| 177-306, gnl|dasNov1|scaffold_68109 (6256-6416) | |
| 177-306, gnl|echTel1|scaffold_316052 (42597-42429) | |
| 177-306, gnl|fr1|chrUn (319424244-319424098) | |
| 177-306, gnl|hg17|chr14 (23980711-23980870) | |
| 177-306, gnl|Hg17|chr14 (23980850-23980720) | |
| 177-306, gnl|loxAfr1|scaffold_9350 (70983-71140) | |
| 177-306, gnl|mm7|chr14 (50766528-50766683) | |
| 177-306, gnl|Mm7|chr14 (50766667-50766537) | |
| 177-306, gnl|monDom2|scaffold_12 (25217550-25217394) | |
| 177-306, gnl|oryCun1|scaffold_179870 (9687-9846) | |
| 177-306, gnl|panTro1|chr15 (22885806-22885965) | |
| 177-306, gnl|rheMac2|chr7 (87339764-87339923) | |
| 177-306, gnl|rn3|chr15 (34060115-34060270) | |
| 177-306, gnl|xenTro1|scaffold_339 (895580-895732) | |
| 450-804, gnl|bosTau2|chr10 (11903087-11902733) | |
| 450-804, gnl|canFam2|chr8 (7418893-7419332) | |
| 450-804, gnl|danRer3|chr2 (34574105-34574549) | |
| 450-804, gnl|dasNov1|scaffold_68109 (4661-5100) | |
| 450-804, gnl|echTel1|scaffold_316052 (44133-43692) | |
| 450-804, gnl|fr1|chrUn (319425775-319425342) | |
| 450-804, gnl|hg17|chr14 (23979130-23979566) | |
| 450-804, gnl|Hg17|chr14 (23979539-23979188) | |
| 450-804, gnl|loxAfr1|scaffold_9350 (69147-69588) | |
| 450-804, gnl|mm7|chr14 (50764957-50765389) | |
| 450-804, gnl|Mm7|chr14 (50765366-50765015) | |
| 450-804, gnl|monDom2|scaffold_12 (25219015-25218575) | |
| 450-804, gnl|oryCun1|scaffold_179870 (8148-8584) | |
| 450-804, gnl|panTro1|chr15 (22884223-22884659) | |
| 450-804, gnl|rheMac2|chr7 (87338164-87338600) | |
| 450-804, gnl|rn3|chr15 (34058557-34058996) | |
| 450-804, gnl|xenTro1|scaffold_339 (894066-894476) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-102, gnl|bosTau2|chr10 (11905316-11905215) | |
| 1-102, gnl|canFam2|chr8 (7421073-7421210) | |
| 1-102, gnl|danRer3|chr2 (34585247-34585384) | |
| 1-102, gnl|dasNov1|scaffold_68109 (6880-7017) | |
| 1-102, gnl|echTel1|scaffold_316052 (41906-41769) | |
| 1-102, gnl|hg17|chr14 (23981387-23981526) | |
| 1-102, gnl|Hg17|chr14 (23981492-23981391) | |
| 1-102, gnl|loxAfr1|scaffold_9350 (71656-71793) | |
| 1-102, gnl|mm7|chr14 (50767162-50767299) | |
| 1-102, gnl|Mm7|chr14 (50767267-50767166) | |
| 1-102, gnl|monDom2|scaffold_12 (25216670-25216535) | |
| 1-102, gnl|oryCun1|scaffold_179870 (10356-10493) | |
| 1-102, gnl|panTro1|chr15 (22886477-22886616) | |
| 1-102, gnl|rheMac2|chr7 (87340422-87340561) | |
| 1-102, gnl|rn3|chr15 (34060691-34060828) | |
| 1-102, gnl|xenTro1|scaffold_339 (898519-898632) | |
| 177-306, gnl|bosTau2|chr10 (11904656-11904526) | |
| 177-306, gnl|canFam2|chr8 (7420418-7420575) | |
| 177-306, gnl|danRer3|chr2 (34581549-34581734) | |
| 177-306, gnl|dasNov1|scaffold_68109 (6256-6416) | |
| 177-306, gnl|echTel1|scaffold_316052 (42597-42429) | |
| 177-306, gnl|fr1|chrUn (319424244-319424098) | |
| 177-306, gnl|hg17|chr14 (23980711-23980870) | |
| 177-306, gnl|Hg17|chr14 (23980850-23980720) | |
| 177-306, gnl|loxAfr1|scaffold_9350 (70983-71140) | |
| 177-306, gnl|mm7|chr14 (50766528-50766683) | |
| 177-306, gnl|Mm7|chr14 (50766667-50766537) | |
| 177-306, gnl|monDom2|scaffold_12 (25217550-25217394) | |
| 177-306, gnl|oryCun1|scaffold_179870 (9687-9846) | |
| 177-306, gnl|panTro1|chr15 (22885806-22885965) | |
| 177-306, gnl|rheMac2|chr7 (87339764-87339923) | |
| 177-306, gnl|rn3|chr15 (34060115-34060270) | |
| 177-306, gnl|xenTro1|scaffold_339 (895580-895732) | |
| 450-804, gnl|bosTau2|chr10 (11903087-11902733) | |
| 450-804, gnl|canFam2|chr8 (7418893-7419332) | |
| 450-804, gnl|danRer3|chr2 (34574105-34574549) | |
| 450-804, gnl|dasNov1|scaffold_68109 (4661-5100) | |
| 450-804, gnl|echTel1|scaffold_316052 (44133-43692) | |
| 450-804, gnl|fr1|chrUn (319425775-319425342) | |
| 450-804, gnl|hg17|chr14 (23979130-23979566) | |
| 450-804, gnl|Hg17|chr14 (23979539-23979188) | |
| 450-804, gnl|loxAfr1|scaffold_9350 (69147-69588) | |
| 450-804, gnl|mm7|chr14 (50764957-50765389) | |
| 450-804, gnl|Mm7|chr14 (50765366-50765015) | |
| 450-804, gnl|monDom2|scaffold_12 (25219015-25218575) | |
| 450-804, gnl|oryCun1|scaffold_179870 (8148-8584) | |
| 450-804, gnl|panTro1|chr15 (22884223-22884659) | |
| 450-804, gnl|rheMac2|chr7 (87338164-87338600) | |
| 450-804, gnl|rn3|chr15 (34058557-34058996) | |
| 450-804, gnl|xenTro1|scaffold_339 (894066-894476) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ton (0.1755) | |
| cki (0.165235) | |
| nmm (0.132802) | |
| ecc (0.115035) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) | |
| cki (0.165235) | |
| nmm (0.132802) | |
| ecc (0.115035) |