Non-Coding RNA Search

Ss1.1-Mixn-0027b09.5

Sequence:


               
               TTACTTGTTAAAGCAAATCAAACTGAGTTTGACATTTGATTCAGTATTTCTAGTATTAAG
TAACATGTATATTTGTTAGTCCTTCTCATTTGGGTCAATTTAAAAGATATGTTGCAAGAT
AGACATAGAAAATACGGGCAGTACTCCTGTTGGCCTCTTGATCAGAAACTTCAGCAGAGC
AGTAAAGAAGTCTATGTGATTCAAACTGAAATTCTTCCCTTAGTTGTTGTAAGAACTTAA
ATGTAAAATAACCTTTTTGAGTTGTAGCCCTCTGAAAAGCCTTGAAGCATGGAGTTGAGG
CAGGGAATGGTACTCACTGAAGTAGAAATGACTGCCCACTTCAGAATCTTCTTTGTGTTT
ATACACAAATGTGCATACCTAAATCAGAGGCATTTTGTAAACGCTTTGCTGACTTGTTCT
TCTATGGAAACACAGAAACCGGACCCATGTTGTAAAGCAGAGAGTCATGTCACATGGAAC
ATGTCCTGTATATATTTCATACACGGTAATGGAATCTTAATGATAAAATGCAAGGTGATA
ATTTAATGATGGGATTAGTCTGATCACTTAATATACACAATCCTGGAAGTGAATTACTTG
CATCAGATGTAGTGGTATTTATTATTCTGTACAGAGAGAAAAATACATATAAAACATATG
CTTACATTACATGCACGCAGATTTCATGCTTCATAAATCTTTTCTATTTTTTAATTTACC
TTTCTCTAAATGATGTGCATGGAATATGCCTTATTATAGAAAAATGCTGTTCATAATTTG
ACTACGTGGAAAAGTGCCTATATGGTGGTAATGCTAGTTAAGGCAAATAAGAAAAATTAT
CATATCAGTTTACTACATCACCAGTTAACATTTTATATTGTGATGTTAAAAAAAAAGAAA
AGTTTATACCTCAAATGTGTATTTTATTTTACAATCAGTTGTGGGGTTGGAATGGGAGGG
TTGGGGAAGGGAAGGTTTATTTACCATAGCCACTAATGGGAAACTTCAAAAAAAAAAAAA
TCCTATATGCCCACTATAGATGTTTCTCTGTTTGCCATTTGTGGTAACTATCACGACTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACTTGTTAAAGCAAATCAAACTGAGTTTGACATTTGATTCAGTATTTCTAGTATTAAG
TAACATGTATATTTGTTAGTCCTTCTCATTTGGGTCAATTTAAAAGATATGTTGCAAGAT
AGACATAGAAAATACGGGCAGTACTCCTGTTGGCCTCTTGATCAGAAACTTCAGCAGAGC
AGTAAAGAAGTCTATGTGATTCAAACTGAAATTCTTCCCTTAGTTGTTGTAAGAACTTAA
ATGTAAAATAACCTTTTTGAGTTGTAGCCCTCTGAAAAGCCTTGAAGCATGGAGTTGAGG
CAGGGAATGGTACTCACTGAAGTAGAAATGACTGCCCACTTCAGAATCTTCTTTGTGTTT
ATACACAAATGTGCATACCTAAATCAGAGGCATTTTGTAAACGCTTTGCTGACTTGTTCT
TCTATGGAAACACAGAAACCGGACCCATGTTGTAAAGCAGAGAGTCATGTCACATGGAAC
ATGTCCTGTATATATTTCATACACGGTAATGGAATCTTAATGATAAAATGCAAGGTGATA
ATTTAATGATGGGATTAGTCTGATCACTTAATATACACAATCCTGGAAGTGAATTACTTG
CATCAGATGTAGTGGTATTTATTATTCTGTACAGAGAGAAAAATACATATAAAACATATG
CTTACATTACATGCACGCAGATTTCATGCTTCATAAATCTTTTCTATTTTTTAATTTACC
TTTCTCTAAATGATGTGCATGGAATATGCCTTATTATAGAAAAATGCTGTTCATAATTTG
ACTACGTGGAAAAGTGCCTATATGGTGGTAATGCTAGTTAAGGCAAATAAGAAAAATTAT
CATATCAGTTTACTACATCACCAGTTAACATTTTATATTGTGATGTTAAAAAAAAAGAAA
AGTTTATACCTCAAATGTGTATTTTATTTTACAATCAGTTGTGGGGTTGGAATGGGAGGG
TTGGGGAAGGGAAGGTTTATTTACCATAGCCACTAATGGGAAACTTCAAAAAAAAAAAAA
TCCTATATGCCCACTATAGATGTTTCTCTGTTTGCCATTTGTGGTAACTATCACGACTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               309-426, - strand, RNAz p=0.57658

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               309-426, - strand, RNAz p=0.57658

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-1080, gnl|bosTau2|chr10 (1882271-1883334)
               

               
               5-1080, gnl|Hg17|chr5 (74704868-74703762)
               

               
               5-1080, gnl|Mm7|chr13 (93707359-93708470)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1080, gnl|bosTau2|chr10 (1882271-1883334)
               

               
               5-1080, gnl|Hg17|chr5 (74704868-74703762)
               

               
               5-1080, gnl|Mm7|chr13 (93707359-93708470)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               pro (0.512033)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               eye (0.170503)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               eye (0.170503)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	5-1080, gnl\|bosTau2\|chr10 (1882271-1883334)
	5-1080, gnl\|Hg17\|chr5 (74704868-74703762)
	5-1080, gnl\|Mm7\|chr13 (93707359-93708470)

	pro (0.512033)
	hea (0.204499)
	jej (0.197844)
	eye (0.170503)
	ova (0.129132)
	sug (0.127291)
	med (0.116252)
	ldo (0.0970026)